PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA35281 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 205aa MW: 23312.9 Da PI: 9.2518 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68 | 9.3e-22 | 18 | 64 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 n++ qvtfskRr g++KKA+EL++LC+a++a+i+fs+t k++ + Tp57577_TGAC_v2_mRNA35281 18 MTNEIHLQVTFSKRRSGLFKKASELCTLCGADAALIVFSPTKKVFSF 64 6799999************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-31 | 8 | 67 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.507 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.33E-34 | 9 | 77 | No hit | No description |
SuperFamily | SSF55455 | 5.23E-28 | 9 | 85 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-18 | 10 | 30 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-23 | 18 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-18 | 30 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-18 | 45 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MSSERTGQGR KKIVIKKMTN EIHLQVTFSK RRSGLFKKAS ELCTLCGADA ALIVFSPTKK 60 VFSFGHPNVD TVIDRYLSLV PPQNNRTMEL IEAQRCANVR ELNAQLTMLN NTLDLEKRRS 120 DELNHMLKMN QAQYWWACPI DGMNKVQLEI FKKSLEDLKI LVAQQAQQAQ FFETQFFQNP 180 LFHPELFGFD NMGGQGGYGP SGFF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 9e-17 | 9 | 93 | 2 | 87 | MEF2C |
5f28_B | 9e-17 | 9 | 93 | 2 | 87 | MEF2C |
5f28_C | 9e-17 | 9 | 93 | 2 | 87 | MEF2C |
5f28_D | 9e-17 | 9 | 93 | 2 | 87 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA35281 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004496799.1 | 1e-101 | agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 1e-50 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2K3LQ55 | 1e-150 | A0A2K3LQ55_TRIPR; MADS-box transcription factor | ||||
STRING | XP_004496799.1 | 1e-101 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 5e-52 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA35281 |
Publications ? help Back to Top | |||
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