PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA35232
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 438aa    MW: 48558.7 Da    PI: 6.6718
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA35232genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.2e-16130175147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  Tp57577_TGAC_v2_mRNA35232 130 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 175
                                899*****************************.***********996 PP
2Myb_DNA-binding55.51.3e-17182225146
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                r ++++eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  Tp57577_TGAC_v2_mRNA35232 182 RRAFSEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 225
                                678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.023125176IPR017930Myb domain
SMARTSM007175.7E-14129178IPR001005SANT/Myb domain
SuperFamilySSF466899.36E-28130223IPR009057Homeodomain-like
PfamPF002491.3E-15130175IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-25131183IPR009057Homeodomain-like
CDDcd001675.36E-13133174No hitNo description
PROSITE profilePS5129426.929177231IPR017930Myb domain
SMARTSM007171.8E-14181229IPR001005SANT/Myb domain
PfamPF002492.6E-14182224IPR001005SANT/Myb domain
CDDcd001671.00E-11184224No hitNo description
Gene3DG3DSA:1.10.10.601.6E-20184230IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MKAWPAIQSS SSTTYSSPSM GMVYANMDSL SLNYTAAAAA SSSSSQDFYV SKEGTDNTTA  60
KWSLPFMRKC CIARNFEENQ NSDEVGEGNG SDSGDDGIGE NNGDKINPNE NNYVSGKEVI  120
DTGHSKLCAR GHWRPAEDSK LKELVALYGP QNWNLIAEKL DGRSGKSCRL RWFNQLDPRI  180
NRRAFSEEEE ERLMQAHRIY GNKWAMIARL FPGRTDNAVK NHWHVIMARK YREQSSAYRR  240
RRLNQSVYRR IEDNAANFVS RDIATGMMEP VPSPYCINLP NGYNITTSFP FSSFHGVIDG  300
GVAIDCGLNG SAHFSGSKEA ISSNKQTPSS PFGLIAQQTP LDFISGGIRN DHYSQMKCWD  360
NQPTGFYHQY PQYMMQMQQQ NNNFYSFSSN STTAATSTTQ ILGSEVSLSS VAATEDHNPP  420
PSDTIPFIDF LGVGATT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-331302307107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237242YRRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA35232
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1400301e-141AC140030.6 Medicago truncatula clone mth2-7g24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003607746.20.0transcription factor CSA
TrEMBLA0A2K3NZD50.0A0A2K3NZD5_TRIPR; R2R3-MYB transcription factor
STRINGAES899430.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.16e-76myb domain protein 105