PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA35188
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family G2-like
Protein Properties Length: 351aa    MW: 39177 Da    PI: 6.4077
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA35188genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.25.7e-312781155
                    G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                               kprl+Wt+eLH+rF ea++qLGG+ekAtPk+++++m+++gLtl+h+kSHLQkYRl
  Tp57577_TGAC_v2_mRNA35188 27 KPRLKWTHELHQRFAEAINQLGGAEKATPKSLMRVMGIPGLTLYHLKSHLQKYRL 81
                               79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-292583IPR009057Homeodomain-like
SuperFamilySSF466899.68E-162682IPR009057Homeodomain-like
TIGRFAMsTIGR015576.2E-222782IPR006447Myb domain, plants
PfamPF002498.1E-82980IPR001005SANT/Myb domain
PfamPF143792.0E-21124169IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MFQSLLQKKQ MDQQNQSMRL VLSTDAKPRL KWTHELHQRF AEAINQLGGA EKATPKSLMR  60
VMGIPGLTLY HLKSHLQKYR LGKSQQVETC SDNKQDYIEI QSTGSQCSRE ISVGNQNQTT  120
ESLKISEALQ IQMEVQKKLY EQIEVQKHLQ FRIEAQGKYL QSVLMKAQEA LAGHGSCSTT  180
GVEHANKDEL LSQLLSIINN ACPSSPISEL TETRGLSLNF GEKKQNRGTM CSLESSLTSS  240
ESSERKEENQ TIDEAENTSN YNSISVELPL ISIVTESKTF KTDTNDEASG KKRSATTDFD  300
GGCVDQSDGK RCGKKLRKSE LSQMLDLNIK YERDVDLSST EIDLNCSSSF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-192683158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-192683158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-192683158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-192683158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-192683158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-192683158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-192683158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-192683158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA35188
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003607716.20.0myb family transcription factor PHL8 isoform X1
SwissprotF4I2741e-76PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A2K3NWN20.0A0A2K3NWN2_TRIPR; MYB-like transcription factor family protein
STRINGXP_004505417.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52183253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.12e-76G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]