PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA35174
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 389aa    MW: 43194.8 Da    PI: 7.6403
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA35174genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.91.6e-31143200259
                                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                dDgynWrKYGqK+vkg efprsYY+Ct+++Cpvkkkver+  d++v++i+Y+geH h+
  Tp57577_TGAC_v2_mRNA35174 143 DDGYNWRKYGQKQVKGCEFPRSYYKCTHPSCPVKKKVERDLVDGHVTQIIYKGEHIHQ 200
                                8********************************************************7 PP
2WRKY104.55.9e-33278335259
                                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                +Dgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k+v +tYeg+Hnh+
  Tp57577_TGAC_v2_mRNA35174 278 EDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCNVRKHVERASTDRKAVMTTYEGKHNHD 335
                                8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-28130202IPR003657WRKY domain
PROSITE profilePS5081125.258137202IPR003657WRKY domain
SuperFamilySSF1182901.06E-24141202IPR003657WRKY domain
SMARTSM007744.5E-33142201IPR003657WRKY domain
PfamPF031067.9E-24143200IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-35263337IPR003657WRKY domain
SuperFamilySSF1182909.29E-29269337IPR003657WRKY domain
PROSITE profilePS5081137.654272337IPR003657WRKY domain
SMARTSM007741.6E-37277336IPR003657WRKY domain
PfamPF031064.2E-25278335IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MVGGGNGEWP SGGGFSPGPM TLISSLFGDN DDCKTFSELL AGAMLDVEHG GGRAAGGGGL  60
LTAPPQQAQG QGYSNVQIQS EHAFSVSVLP TTTTSLTQVP AVTFNNIPQQ LIPNYEESKT  120
KSVDYSSNSE HRMQQSSFEK ANDDGYNWRK YGQKQVKGCE FPRSYYKCTH PSCPVKKKVE  180
RDLVDGHVTQ IIYKGEHIHQ RPHPSKLTKE NSNVQQDRVD YETCDSDEEG DNETEVDYEP  240
DLKKRNTEVR LLDPSFSHGT VSKPKIIVQT TSDVDLLEDG YRWRKYGQKV VKGNPYPRSY  300
YKCTTPGCNV RKHVERASTD RKAVMTTYEG KHNHDVPTAK TNSHTLASNN SASQLKSQNV  360
IPEMHNMNRR GQQPSTVARL RLKEEHSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-40133337877Probable WRKY transcription factor 4
2lex_A3e-40133337877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15058GGRAAGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA35174
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-52AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003607772.10.0probable WRKY transcription factor 3
SwissprotQ9ZQ701e-102WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A2K3LGK10.0A0A2K3LGK1_TRIPR; WRKY transcription factor
STRINGAES899690.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-103WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]