PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA35095 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MYB_related | ||||||||
Protein Properties | Length: 250aa MW: 28106.5 Da PI: 8.3896 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.8 | 1.4e-14 | 88 | 133 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g WT+eE+e ++++ k G+g W+ I+r+ k+Rt+ q+ s+ qk+ Tp57577_TGAC_v2_mRNA35095 88 GVWTEEEHEMFLKGLKHIGKGKWTEISRRYVKTRTPTQVASHAQKH 133 78******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.68 | 82 | 138 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-8 | 86 | 136 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.39E-15 | 87 | 138 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.4E-11 | 88 | 133 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.3E-11 | 88 | 133 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 4.2E-13 | 89 | 136 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 3.39E-9 | 90 | 133 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MSMSRTCSQC GHISQTCNDG REHSIMLFGV KITVATNNNN NNNGDNNLYQ NQQPTPQVSS 60 SSDASTVSDN IAVHASTRSR KCKQFNEGVW TEEEHEMFLK GLKHIGKGKW TEISRRYVKT 120 RTPTQVASHA QKHSLHRSNP NRRRNRKSSV FDLTTDTVII FLFQQLSFIC KEIEVESSTI 180 MEDEQIQQET VVPLPPPTXX XXXXXXAYPS TQSCGSPANS PLPIVLGQAA LPVWPLSWVN 240 FNDNVFFFR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA35095 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004489945.1 | 3e-55 | transcription factor MYB1R1-like | ||||
Refseq | XP_012568256.1 | 3e-55 | transcription factor MYB1R1-like | ||||
TrEMBL | A0A2K3LW19 | 1e-118 | A0A2K3LW19_TRIPR; Transcription factor MYB 1R1-like protein | ||||
STRING | XP_004489945.1 | 1e-54 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3213 | 32 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G70000.2 | 4e-30 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA35095 |