PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA34960

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bHLH

Protein Properties

Length: 453aa MW: 52249.4 Da PI: 8.6986

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA34960	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.6	4.6e-08	322	366	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r RR++i ++ +eL +l+P +K++ ae+L A +Y+k Lq Tp57577_TGAC_v2_mRNA34960 322 SIVARERRRKITEKTQELGKLVPGG-----PKMNTAEMLSAAANYVKFLQ 366 67889****************95.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.563	316	365	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-11	319	374	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.19E-8	319	369	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.4E-11	321	373	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-5	322	366	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-10	322	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
MTQTTNPSMI ATDSGLAQIK RNQLYQARPQ KFWGPIPFLR VQCLVVGYGN MLSRKETRSS 60 MPRAKDALDK TSLLLEESPN SNEAYCLQLR LPSGRRQRNN NKIRNNITGI GSCKENSNTR 120 RTHWHCGIYR PPRWKVLYFS TIMGALSKYY NYNSYPYQPL QTNTNSEIIT FQHHEQEQQL 180 LLLPELTQIS EHNHHFSSSY LDETLFFQSP YFYSNETYPS HEQLLFDSTF SSQNDGFISM 240 NEIFPNEENF NTYLPCAKRQ KLCYEEKKVQ QQEEILNSTN FFVDEFMTNP FGSFEAEQPF 300 CSASKIVGCE KKVYEKTISS QSIVARERRR KITEKTQELG KLVPGGPKMN TAEMLSAAAN 360 YVKFLQAQVG MLQVMGTLSK EEKEPPPSQD IHKLLVSPFV QEKLYLEEKC FVPKEFITTL 420 TNHVDVRSKP TILKGLKQLI GTEINEKKPK QE*

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

MTQTTNPSMI ATDSGLAQIK RNQLYQARPQ KFWGPIPFLR VQCLVVGYGN MLSRKETRSS  60
MPRAKDALDK TSLLLEESPN SNEAYCLQLR LPSGRRQRNN NKIRNNITGI GSCKENSNTR  120
RTHWHCGIYR PPRWKVLYFS TIMGALSKYY NYNSYPYQPL QTNTNSEIIT FQHHEQEQQL  180
LLLPELTQIS EHNHHFSSSY LDETLFFQSP YFYSNETYPS HEQLLFDSTF SSQNDGFISM  240
NEIFPNEENF NTYLPCAKRQ KLCYEEKKVQ QQEEILNSTN FFVDEFMTNP FGSFEAEQPF  300
CSASKIVGCE KKVYEKTISS QSIVARERRR KITEKTQELG KLVPGGPKMN TAEMLSAAAN  360
YVKFLQAQVG MLQVMGTLSK EEKEPPPSQD IHKLLVSPFV QEKLYLEEKC FVPKEFITTL  420
TNHVDVRSKP TILKGLKQLI GTEINEKKPK QE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA34960

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013464235.1	1e-131	transcription factor bHLH52
TrEMBL	A0A072VKB3	1e-154	A0A072VKB3_MEDTR; Helix loop helix DNA-binding domain protein
STRING	AES84889	1e-130	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3459	30	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34820.1	1e-27	bHLH family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA34960