PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA34848
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 593aa    MW: 65712.1 Da    PI: 6.7618
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA34848genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1031.6e-32257314260
                                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                dDgynWrKYGqK+v+gse+prsYY+Ct+++Cp+kkkvers  +++++ei+Y+g+Hnh+k
  Tp57577_TGAC_v2_mRNA34848 257 DDGYNWRKYGQKQVRGSENPRSYYKCTYPNCPTKKKVERSI-EGQITEIVYKGNHNHPK 314
                                8****************************************.***************85 PP
2WRKY103.41.2e-32432490159
                                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d k+v++tYeg+H+h+
  Tp57577_TGAC_v2_mRNA34848 432 LDDGYKWRKYGQKVVKGNPNPRSYYKCTYQGCPVRKHVERASHDIKAVITTYEGKHTHD 490
                                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.1E-27253315IPR003657WRKY domain
SuperFamilySSF1182901.57E-24254315IPR003657WRKY domain
SMARTSM007743.4E-34256314IPR003657WRKY domain
PfamPF031069.4E-25257313IPR003657WRKY domain
PROSITE profilePS5081123.101257315IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.4E-37417492IPR003657WRKY domain
SuperFamilySSF1182903.01E-29424492IPR003657WRKY domain
PROSITE profilePS5081137.665427492IPR003657WRKY domain
SMARTSM007748.4E-39432491IPR003657WRKY domain
PfamPF031061.9E-25433490IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MTSSSSSLEN NNNNNFLNNF TFSTHPFMIT SSFSDLLAST IEEKSSGERN GYGYGGGGNG  60
GGVPKFKSIP PPSLPLSPPP VSPSSYFSIP PGLSPAELLD SPIMLNSSNI LPSPTTGSFA  120
GQSHNWMNNS EENQIIPKES DKSFSNFSFQ TQQGPAVTGS NTTLKSSTVA VEQQQPWSYQ  180
EITNQNGFSP ENNMIQTENN SSMQSFSPET NMIQAENNNI SMQSFSPEIA NVQTITNNNG  240
FQLDHNTNYT ILSRRSDDGY NWRKYGQKQV RGSENPRSYY KCTYPNCPTK KKVERSIEGQ  300
ITEIVYKGNH NHPKPQAGFR RNSSSSSNFL VIVPVNPNGN EIHDHSYGSH GNGQMDSVAT  360
PENSSISIGG DDDFEQSSLQ RARSVGADEF VEEEPEPKRW RNESENQGIV LGHRTVREPR  420
VVVQTTSDID ILDDGYKWRK YGQKVVKGNP NPRSYYKCTY QGCPVRKHVE RASHDIKAVI  480
TTYEGKHTHD VPAARGSGSN SMNRPTPSNP LHQSNVPYSI RPLQMQLPQG QVRPFHPDLL  540
LGQGNYGISG FGNQMMPYMN HQQQQQQQHM TENGFSSRAN DEPKDFLASL LC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-32257493878Probable WRKY transcription factor 4
2lex_A1e-32257493878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA34848
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9329601e-124CR932960.3 Medicago truncatula chromosome 5 clone mth4-7a5, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004490681.10.0WRKY transcription factor WRKY24
SwissprotQ6IEQ71e-123WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLA0A2K3P9Z60.0A0A2K3P9Z6_TRIPR; WRKY transcription factor
STRINGXP_004490681.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-101WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  4. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]