PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA34685
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 230aa    MW: 27011.6 Da    PI: 8.3739
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA34685genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.3e-151663148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g+WT+ Edell+d+++++G g W++++++ g++R++k+c+ rw++yl
  Tp57577_TGAC_v2_mRNA34685 16 KGAWTKFEDELLKDCIQRYGVGKWHLVPQRAGLKRCRKSCRMRWLNYL 63
                               79********************************************97 PP
2Myb_DNA-binding49.68.8e-1669114148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                rg ++++E +l ++++++lG++ W++Ia +++ gRt +++k++w++y+
  Tp57577_TGAC_v2_mRNA34685  69 RGEFSEDEVDLMIKLHNLLGNR-WSLIAGRLP-GRTSNDVKNYWNTYM 114
                                899*******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-211066IPR009057Homeodomain-like
PROSITE profilePS5129415.7121163IPR017930Myb domain
SuperFamilySSF466891.69E-2714110IPR009057Homeodomain-like
SMARTSM007174.7E-121565IPR001005SANT/Myb domain
PfamPF002498.5E-141663IPR001005SANT/Myb domain
CDDcd001672.17E-81863No hitNo description
PROSITE profilePS5129423.93964118IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2267117IPR009057Homeodomain-like
SMARTSM007173.3E-1468116IPR001005SANT/Myb domain
PfamPF002493.7E-1469113IPR001005SANT/Myb domain
CDDcd001673.00E-971114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MQHSSSDVVE SSSLRKGAWT KFEDELLKDC IQRYGVGKWH LVPQRAGLKR CRKSCRMRWL  60
NYLNPNIKRG EFSEDEVDLM IKLHNLLGNR WSLIAGRLPG RTSNDVKNYW NTYMRSKKEK  120
NKMKEKIETM KPHEVIKPQP RTFSKPMLEL NKFIASNDHS CSKVNMNEEL GATSSGTCNW  180
WKTLLFDDNE DHNNHLCEMD FWDDQELNSR INSFDFLESQ TWSDFLAQI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-25141175107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA34685
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004491866.11e-102transcription factor MYB114-like
SwissprotQ9FNV92e-55MY113_ARATH; Transcription factor MYB113
TrEMBLA0A1S2XN231e-101A0A1S2XN23_CICAR; transcription factor MYB114-like
STRINGXP_004491866.11e-101(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.14e-53myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]