PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA34676
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 634aa    MW: 70537.4 Da    PI: 5.8732
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA34676genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS161.19.5e-502725212248
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                                +++L+e+A+a+s+g++  a ++L+rl ++ +p+  ++ qRl+ +++ AL++rl+     + +   + e     s  ++ +++l+
  Tp57577_TGAC_v2_mRNA34676 272 KQTLIEAANAISEGKNDVALEILTRLVQNLNPNLmNSDQRLTNCMVSALKSRLNP----VENPPVVAEL---FSRGHAESTQLL 348
                                689**************************888888*******************9....3333333333...3778888999** PP

                       GRAS  85 sevsPilkfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.....egppslRiTgvgspesgskeele 159
                                 e s ++k+s+++aN  I+ea+ +e    +   ++Df+i+qG Q+++Ll+aL +R+     ++  +l++ +v++  +g  e+++
  Tp57577_TGAC_v2_mRNA34676 349 LENSDCFKVSFMAANLVIMEAAFEEngngKGFCVVDFEIGQGKQYVNLLHALKAREvsvstASGFTLKVVAVAE--NGGDERVK 430
                                ********************876555777778************************877433344788888888..78****** PP

                       GRAS 160 etgerLakfAeelgvpfefnvlvak..rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241
                                ++ge L++ Ae+l++ fef++ +++  ++++l+ e L ++++E+l+Vn++++l r++desvs+e++rde+L+ vk+l P+vv++
  Tp57577_TGAC_v2_mRNA34676 431 AVGEMLSRQAEKLKIGFEFRIATVSqrKMNELTRELLGCDSEETLIVNFAFKLNRIPDESVSTENPRDELLRRVKKLAPRVVTI 514
                                ********************97443369******************************************************** PP

                       GRAS 242 veqeadh 248
                                veqe++ 
  Tp57577_TGAC_v2_mRNA34676 515 VEQEMNX 521
                                *****96 PP

2GRAS636.2e-20543611235304
                       GRAS 235 sPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae 304
                                 P+vv+++eqe+++n+++Fl+r++e+ +yysal+ds+e+ l++++++r+k+E+  l+r+++n vaceg++
  Tp57577_TGAC_v2_mRNA34676 543 APRVVTIAEQEMNCNTAPFLARVAESWSYYSALYDSVESDLGKDNSDRVKIEEG-LSRKLCNSVACEGRD 611
                                6*****************************************************.*************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.814245633IPR005202Transcription factor GRAS
PfamPF035143.3E-47272521IPR005202Transcription factor GRAS
PfamPF035142.1E-17543611IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MSSPGFNAGG NGSSEYFSGR STNTINNLTT TNNLHHNLSL YRTQQQQQPL PPIFLDPSSQ  60
IPQQRFIGKR TLAEFQTQQN QTYNINNNNL NLNNNNHNNH VLSNLLLRSV KPRTTTNFQF  120
QNNSPSSFSL PELQQNPFNN IYQTHRLGVP LQMNPNFHHY RTTSNLTQVI NRVQNQNQTV  180
EPVKEKKINS DHTLLQELEK QLLEDNDDDG EASVITTSEW SETYQNLIGP GTGPCNGPGP  240
IQAQKQVSSS PTSSTTSSTS SSAASPASVC SKQTLIEAAN AISEGKNDVA LEILTRLVQN  300
LNPNLMNSDQ RLTNCMVSAL KSRLNPVENP PVVAELFSRG HAESTQLLLE NSDCFKVSFM  360
AANLVIMEAA FEENGNGKGF CVVDFEIGQG KQYVNLLHAL KAREVSVSTA SGFTLKVVAV  420
AENGGDERVK AVGEMLSRQA EKLKIGFEFR IATVSQRKMN ELTRELLGCD SEETLIVNFA  480
FKLNRIPDES VSTENPRDEL LRRVKKLAPR VVTIVEQEMN XXXXXXXXXX XXXXXXXXXX  540
XXAPRVVTIA EQEMNCNTAP FLARVAESWS YYSALYDSVE SDLGKDNSDR VKIEEGLSRK  600
LCNSVACEGR DXXXXXXXXX XXXXXXXXXX XNQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA34676
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013452181.10.0scarecrow-like protein 8
TrEMBLA0A2K3NFN50.0A0A2K3NFN5_TRIPR; Uncharacterized protein
STRINGXP_004512836.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62663151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.12e-89SCARECROW-like 8