PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA34676 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | GRAS | ||||||||
Protein Properties | Length: 634aa MW: 70537.4 Da PI: 5.8732 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 161.1 | 9.5e-50 | 272 | 521 | 2 | 248 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 +++L+e+A+a+s+g++ a ++L+rl ++ +p+ ++ qRl+ +++ AL++rl+ + + + e s ++ +++l+ Tp57577_TGAC_v2_mRNA34676 272 KQTLIEAANAISEGKNDVALEILTRLVQNLNPNLmNSDQRLTNCMVSALKSRLNP----VENPPVVAEL---FSRGHAESTQLL 348 689**************************888888*******************9....3333333333...3778888999** PP GRAS 85 sevsPilkfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.....egppslRiTgvgspesgskeele 159 e s ++k+s+++aN I+ea+ +e + ++Df+i+qG Q+++Ll+aL +R+ ++ +l++ +v++ +g e+++ Tp57577_TGAC_v2_mRNA34676 349 LENSDCFKVSFMAANLVIMEAAFEEngngKGFCVVDFEIGQGKQYVNLLHALKAREvsvstASGFTLKVVAVAE--NGGDERVK 430 ********************876555777778************************877433344788888888..78****** PP GRAS 160 etgerLakfAeelgvpfefnvlvak..rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241 ++ge L++ Ae+l++ fef++ +++ ++++l+ e L ++++E+l+Vn++++l r++desvs+e++rde+L+ vk+l P+vv++ Tp57577_TGAC_v2_mRNA34676 431 AVGEMLSRQAEKLKIGFEFRIATVSqrKMNELTRELLGCDSEETLIVNFAFKLNRIPDESVSTENPRDELLRRVKKLAPRVVTI 514 ********************97443369******************************************************** PP GRAS 242 veqeadh 248 veqe++ Tp57577_TGAC_v2_mRNA34676 515 VEQEMNX 521 *****96 PP | |||||||
2 | GRAS | 63 | 6.2e-20 | 543 | 611 | 235 | 304 |
GRAS 235 sPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae 304 P+vv+++eqe+++n+++Fl+r++e+ +yysal+ds+e+ l++++++r+k+E+ l+r+++n vaceg++ Tp57577_TGAC_v2_mRNA34676 543 APRVVTIAEQEMNCNTAPFLARVAESWSYYSALYDSVESDLGKDNSDRVKIEEG-LSRKLCNSVACEGRD 611 6*****************************************************.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 33.814 | 245 | 633 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.3E-47 | 272 | 521 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.1E-17 | 543 | 611 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 634 aa Download sequence Send to blast |
MSSPGFNAGG NGSSEYFSGR STNTINNLTT TNNLHHNLSL YRTQQQQQPL PPIFLDPSSQ 60 IPQQRFIGKR TLAEFQTQQN QTYNINNNNL NLNNNNHNNH VLSNLLLRSV KPRTTTNFQF 120 QNNSPSSFSL PELQQNPFNN IYQTHRLGVP LQMNPNFHHY RTTSNLTQVI NRVQNQNQTV 180 EPVKEKKINS DHTLLQELEK QLLEDNDDDG EASVITTSEW SETYQNLIGP GTGPCNGPGP 240 IQAQKQVSSS PTSSTTSSTS SSAASPASVC SKQTLIEAAN AISEGKNDVA LEILTRLVQN 300 LNPNLMNSDQ RLTNCMVSAL KSRLNPVENP PVVAELFSRG HAESTQLLLE NSDCFKVSFM 360 AANLVIMEAA FEENGNGKGF CVVDFEIGQG KQYVNLLHAL KAREVSVSTA SGFTLKVVAV 420 AENGGDERVK AVGEMLSRQA EKLKIGFEFR IATVSQRKMN ELTRELLGCD SEETLIVNFA 480 FKLNRIPDES VSTENPRDEL LRRVKKLAPR VVTIVEQEMN XXXXXXXXXX XXXXXXXXXX 540 XXAPRVVTIA EQEMNCNTAP FLARVAESWS YYSALYDSVE SDLGKDNSDR VKIEEGLSRK 600 LCNSVACEGR DXXXXXXXXX XXXXXXXXXX XNQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA34676 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013452181.1 | 0.0 | scarecrow-like protein 8 | ||||
TrEMBL | A0A2K3NFN5 | 0.0 | A0A2K3NFN5_TRIPR; Uncharacterized protein | ||||
STRING | XP_004512836.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6266 | 31 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52510.1 | 2e-89 | SCARECROW-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA34676 |