PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA34602 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | WRKY | ||||||||
Protein Properties | Length: 521aa MW: 57080.2 Da PI: 6.9977 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105.2 | 3.4e-33 | 226 | 282 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkgse+prsYY+Ct+ +Cpvkkkver+ d++++ei+Y+g+Hnh+ Tp57577_TGAC_v2_mRNA34602 226 DDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCPVKKKVERAP-DGHITEIIYKGQHNHD 282 8****************************************.***************8 PP | |||||||
2 | WRKY | 107.2 | 8e-34 | 406 | 464 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++dpk+v++tYeg+Hnh+ Tp57577_TGAC_v2_mRNA34602 406 LDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASTDPKAVITTYEGKHNHD 464 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.8E-29 | 222 | 285 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.4E-26 | 224 | 284 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.4E-37 | 225 | 283 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-25 | 226 | 282 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.099 | 226 | 284 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.4E-37 | 391 | 466 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.29E-29 | 398 | 466 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 39.192 | 401 | 466 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.6E-40 | 406 | 465 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-26 | 407 | 464 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 521 aa Download sequence Send to blast |
MSTTNPSDTD TASPPPTRPT ITLPPRPSVE AFFAGAASPG PMTLVSSFFA TESATFSQLL 60 AGAMASPLAF SSSSSGDFIS GKDDDGSNRN MGFKQSRPMN LVIARSPVFT VPPGLSPSGF 120 LNSPGFFSPQ SPFGMSHQQA LAQVTAQAVL AQSHNMHMQP EYQQVSLEPH TEQRVEQPSY 180 TLSEASEQQM VVHASEPRNT QMETSEISHS DKKYQPASLP IDKPADDGYN WRKYGQKQVK 240 GSEYPRSYYK CTHLNCPVKK KVERAPDGHI TEIIYKGQHN HDKPQANKRS KENSDVNGNA 300 NVQPKSDSNS QGWYENSNKI SESVPDSSVP EPENDPTSNQ GALLPWPGTS ESEEVGDAGN 360 KEGGDGVEPN PKRRNIEPAV PEVPPSQKTV TEPKIIVQTR SEVDLLDDGY RWRKYGQKVV 420 KGNPHPRSYY KCTSAGCNVR KHVERASTDP KAVITTYEGK HNHDVPAARN SSHNTANSNS 480 MLSKPQTVAP EKHPLLKDME FGNNDQRPVH LRLKEEQIIV * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-40 | 226 | 467 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-40 | 226 | 467 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00260 | DAP | Transfer from AT2G03340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA34602 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003621317.2 | 0.0 | probable WRKY transcription factor 3 | ||||
Swissprot | Q9ZQ70 | 1e-141 | WRKY3_ARATH; Probable WRKY transcription factor 3 | ||||
TrEMBL | A0A2Z6LTF6 | 0.0 | A0A2Z6LTF6_TRISU; Uncharacterized protein | ||||
STRING | AES77535 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1545 | 34 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03340.1 | 1e-120 | WRKY DNA-binding protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA34602 |
Publications ? help Back to Top | |||
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