PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA34602
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 521aa    MW: 57080.2 Da    PI: 6.9977
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA34602genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.23.4e-33226282259
                                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                dDgynWrKYGqK+vkgse+prsYY+Ct+ +Cpvkkkver+  d++++ei+Y+g+Hnh+
  Tp57577_TGAC_v2_mRNA34602 226 DDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCPVKKKVERAP-DGHITEIIYKGQHNHD 282
                                8****************************************.***************8 PP

2WRKY107.28e-34406464159
                                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++dpk+v++tYeg+Hnh+
  Tp57577_TGAC_v2_mRNA34602 406 LDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASTDPKAVITTYEGKHNHD 464
                                59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-29222285IPR003657WRKY domain
SuperFamilySSF1182903.4E-26224284IPR003657WRKY domain
SMARTSM007745.4E-37225283IPR003657WRKY domain
PfamPF031061.4E-25226282IPR003657WRKY domain
PROSITE profilePS5081124.099226284IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-37391466IPR003657WRKY domain
SuperFamilySSF1182901.29E-29398466IPR003657WRKY domain
PROSITE profilePS5081139.192401466IPR003657WRKY domain
SMARTSM007749.6E-40406465IPR003657WRKY domain
PfamPF031061.8E-26407464IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MSTTNPSDTD TASPPPTRPT ITLPPRPSVE AFFAGAASPG PMTLVSSFFA TESATFSQLL  60
AGAMASPLAF SSSSSGDFIS GKDDDGSNRN MGFKQSRPMN LVIARSPVFT VPPGLSPSGF  120
LNSPGFFSPQ SPFGMSHQQA LAQVTAQAVL AQSHNMHMQP EYQQVSLEPH TEQRVEQPSY  180
TLSEASEQQM VVHASEPRNT QMETSEISHS DKKYQPASLP IDKPADDGYN WRKYGQKQVK  240
GSEYPRSYYK CTHLNCPVKK KVERAPDGHI TEIIYKGQHN HDKPQANKRS KENSDVNGNA  300
NVQPKSDSNS QGWYENSNKI SESVPDSSVP EPENDPTSNQ GALLPWPGTS ESEEVGDAGN  360
KEGGDGVEPN PKRRNIEPAV PEVPPSQKTV TEPKIIVQTR SEVDLLDDGY RWRKYGQKVV  420
KGNPHPRSYY KCTSAGCNVR KHVERASTDP KAVITTYEGK HNHDVPAARN SSHNTANSNS  480
MLSKPQTVAP EKHPLLKDME FGNNDQRPVH LRLKEEQIIV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-40226467878Probable WRKY transcription factor 4
2lex_A2e-40226467878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA34602
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003621317.20.0probable WRKY transcription factor 3
SwissprotQ9ZQ701e-141WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A2Z6LTF60.0A0A2Z6LTF6_TRISU; Uncharacterized protein
STRINGAES775350.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-120WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]