PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA34569
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family TCP
Protein Properties Length: 381aa    MW: 42539 Da    PI: 9.3336
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA34569genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP107.32.3e-33582042132
                        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec 73 
                                 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i++l+ +            +++s++e+
  Tp57577_TGAC_v2_mRNA34569  58 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKQEIDQLPPLpnfppigtnfnfGFPSSNET 141
                                689*************************************************************99999999999988888888 PP

                        TCP  74 eaesssssasnsssgkaaksaakskksqksaasalnlakesrakarar.....arertrekmri 132
                                ++++s+  ++  + +++++ + +++ s+++++ +ln+++ sr+  +++     +r +t+e+ ++
  Tp57577_TGAC_v2_mRNA34569 142 STNTSHLHQQLLNFNRNNNIHWEGSTSSQNSSWKLNPKEVSREMVSEKpnywmNR-STQEEENN 204
                                7777777777666666666666888888888888999999997777775554323.33333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136930.28460118IPR017887Transcription factor TCP subgroup
PfamPF036346.9E-3160203IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MNKNSKEAEF PLKQEVPHNS NDQHEKEKAS PSSSSLASSS SQWPRLKDPR IVRVSRAFGG  60
KDRHSKVCTI RGLRDRRVRL SVPTAIQLYD LQDRLGLNQP SKVVDWLLNA AKQEIDQLPP  120
LPNFPPIGTN FNFGFPSSNE TSTNTSHLHQ QLLNFNRNNN IHWEGSTSSQ NSSWKLNPKE  180
VSREMVSEKP NYWMNRSTQE EENNKQGSNI EGTSPSAIVL QNNNNLLQRP NHPSFLGLLN  240
TMPLGTNYNW GGASSNDVVN SSQLGGNIGL ITNQHDGNAI TSLPPMLSLS TGNSSQMLLG  300
TSQSYFSSNV NAMEMDHHHQ HQREINSLHY HQMLSSSNSQ NPLNNSLNNP SFSLAMMSTP  360
KFLQSSRENT SNKEQDFNPK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-1965119155Putative transcription factor PCF6
5zkt_B7e-1965119155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA34569
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0524941e-142BT052494.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-J-6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013447599.10.0transcription factor TCP17
TrEMBLA0A2K3NGJ40.0A0A2K3NGJ4_TRIPR; Transcription factor TCP5-like protein
STRINGXP_004499467.11e-137(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.19e-47plastid transcription factor 1