PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA3451

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

G2-like

Protein Properties

Length: 363aa MW: 40519.9 Da PI: 7.8083

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA3451	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.1	3.6e-32	179	232	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Tp57577_TGAC_v2_mRNA3451 179 PRMRWTTSLHNRFVHAVELLGGHERATPKSVLELMDVKDLTLSHVKSHLQMYRT 232 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.22E-15	176	232	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-28	177	232	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.1E-24	179	232	IPR006447	Myb domain, plants
Pfam	PF00249	8.7E-8	180	231	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MELFPAQPDL SLQISLPNTK QTSNWRKNSD DQEDMDLGFW KRAFESKSDS NYTFDLSLSN 60 PRVSSSSSSS SSPTTTTTTS NLNNLITHSF QDTNNSINPF QPFHQNQNNY QTLSDELGFL 120 KPIRGIPVYH QNPSPIGLFS QPSFNASVSS STTTFQSQVP LIRSKFLPRF PSKRSVRAPR 180 MRWTTSLHNR FVHAVELLGG HERATPKSVL ELMDVKDLTL SHVKSHLQMY RTVKITDRAA 240 VSPGIGQSDM YENGSSGDTS EDFMFDINSS TRSNDLPIKL DKEITNQEKE CCGIWRNSSR 300 EAWLHGNPKV HPIQNVSSLE GIDPKHLSNE RTSSDGSSSS SISGTRLKKP NLDLEFTLST 360 SL*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MELFPAQPDL SLQISLPNTK QTSNWRKNSD DQEDMDLGFW KRAFESKSDS NYTFDLSLSN  60
PRVSSSSSSS SSPTTTTTTS NLNNLITHSF QDTNNSINPF QPFHQNQNNY QTLSDELGFL  120
KPIRGIPVYH QNPSPIGLFS QPSFNASVSS STTTFQSQVP LIRSKFLPRF PSKRSVRAPR  180
MRWTTSLHNR FVHAVELLGG HERATPKSVL ELMDVKDLTL SHVKSHLQMY RTVKITDRAA  240
VSPGIGQSDM YENGSSGDTS EDFMFDINSS TRSNDLPIKL DKEITNQEKE CCGIWRNSSR  300
EAWLHGNPKV HPIQNVSSLE GIDPKHLSNE RTSSDGSSSS SISGTRLKKP NLDLEFTLST  360
SL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-18	180	234	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-18	180	234	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	9e-18	180	234	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-18	180	234	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-18	180	234	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-18	180	234	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-18	180	234	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-18	180	234	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-18	180	234	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-18	180	234	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-18	180	234	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-18	180	234	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA3451

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC150505	9e-84	AC150505.12 Medicago truncatula chromosome 8 clone mth2-99l2, complete sequence.
GenBank	AC150647	9e-84	AC150647.13 Medicago truncatula chromosome 8 clone mth2-65p21, complete sequence.
GenBank	AC174378	9e-84	AC174378.11 Medicago truncatula chromosome 8 clone mth2-57m5, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024627494.1	1e-171	probable transcription factor KAN2 isoform X2
Swissprot	Q9C616	2e-81	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	G7LGX4	1e-167	G7LGX4_MEDTR; Putative transcription factor MYB-HB-like family
STRING	AET03223	1e-170	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5968	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	1e-63	G2-like family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA3451

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]