PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA34496
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family SRS
Protein Properties Length: 350aa    MW: 37938.5 Da    PI: 7.5869
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA34496genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702207.63.3e-641302704154
                     DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsal 86 
                                 ++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpa++rrerqqql+++ss +++++ +++ skr+r+         
  Tp57577_TGAC_v2_mRNA34496 130 EGISCQDCGNQAKKDCTHMRCRTCCKSRGFHCQTHVKSTWVPASRRRERQQQLTSSSSLQQQQQqQRDISKRPRD--------- 204
                                5789***********************************************999876654433325555666665......... PP

                     DUF702  87 sstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                                  + +++ + ++ le +++P+ vss+a frcvrvss+d++++ +aYqtav+igGh+fkGiLyd G+e+
  Tp57577_TGAC_v2_mRNA34496 205 --SLVPTRNFPSGLEEANFPAVVSSPAEFRCVRVSSIDEADDRYAYQTAVNIGGHLFKGILYDFGPET 270
                                ..45666788889999*************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.7E-64131269IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016234.5E-28133175IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.5E-24221268IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MAGLFSLGGG GGGGRGGESN QQGHQQGQIP PQEALLWYNK NDDVSSYRGN LELWNQQQQH  60
QHHHQQHQHQ QQEEDMHGVN VARPFFSRDL YGLGVGPSRV SSDDHSSPRS AAAAFNMTVR  120
SSAGGGSVVE GISCQDCGNQ AKKDCTHMRC RTCCKSRGFH CQTHVKSTWV PASRRRERQQ  180
QLTSSSSLQQ QQQQQRDISK RPRDSLVPTR NFPSGLEEAN FPAVVSSPAE FRCVRVSSID  240
EADDRYAYQT AVNIGGHLFK GILYDFGPET SSNNNNNNNY NSSNYMIGET SGGSGVGVAQ  300
PLNLITDSDV TVAASSGALV DPSSLYSAAA PINAFMTASG TQFFPRPRS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA34496
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013446370.11e-153protein SHI RELATED SEQUENCE 1
SwissprotQ9SD405e-77SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBLA0A2K3NEK60.0A0A2K3NEK6_TRIPR; Short internode related sequence
STRINGXP_004509324.11e-150(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.13e-58Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]