PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA34491 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ARR-B | ||||||||
Protein Properties | Length: 569aa MW: 64528.8 Da PI: 6.43 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 74.7 | 1.3e-23 | 199 | 252 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++W+ +LH++Fv+av+q+ G +k Pk+il+lm+v+ L++e+v+SHLQkYRl Tp57577_TGAC_v2_mRNA34491 199 KARVVWSVDLHQKFVKAVNQI-GFDKVGPKKILDLMNVPWLSRENVASHLQKYRL 252 68*******************.9*******************************8 PP | |||||||
2 | Response_reg | 81.3 | 3.1e-27 | 19 | 127 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahge 82 vl+vdD+p+ +++l+++l+k +y ev+++ ++ al ll+e++ +D+++ D++mp+mdG++ll++ e +lp+i+++ ge Tp57577_TGAC_v2_mRNA34491 19 VLVVDDDPTWLKILEKMLKKCNY-EVTTCCLARHALSLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGE 100 89*********************.***************999999**********************6644.8*********** PP HHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 83 eedalealkaGakdflsKpfdpeelvk 109 + + + ++ Ga d+l Kp+ ++el++ Tp57577_TGAC_v2_mRNA34491 101 TSRVMKGVQHGACDYLLKPIRMKELRN 127 ************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 1.2E-35 | 15 | 141 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 7.0E-44 | 16 | 152 | No hit | No description |
SMART | SM00448 | 1.6E-31 | 17 | 129 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.106 | 18 | 133 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.0E-24 | 19 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.51E-29 | 20 | 133 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.5E-27 | 196 | 257 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.63E-16 | 197 | 256 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.9E-21 | 199 | 252 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.0E-7 | 201 | 251 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 569 aa Download sequence Send to blast |
MDNGCFSSPR RDFPNGLRVL VVDDDPTWLK ILEKMLKKCN YEVTTCCLAR HALSLLRERK 60 DGYDIVISDV NMPDMDGFKL LEHVGLEMDL PVIMMSVDGE TSRVMKGVQH GACDYLLKPI 120 RMKELRNIWQ HVFRKRIHEV RDFENFESFE SMHLMTNGSE LSEEGNLFAL EDMTTTKKRK 180 DLDNKHDDKE FLDSSSSKKA RVVWSVDLHQ KFVKAVNQIG FDKVGPKKIL DLMNVPWLSR 240 ENVASHLQKY RLYLSRLQKD NEQKSSPSGM KHSDLPSKDV GNFNFPNSAI KQQNDASIDR 300 CNYSEGTLHH QNMETKSHEG NPKGIVPHST TAEKARPLTG NITDANIQPF ASLESERKHA 360 AFDCTMSTPY SWTDIPKSQL KKEQKPVVHL EDNFNLLPFH GKKHNIQVDQ SQSIASISST 420 PSITEQDVAA CIETKPRFSG YKKDYTSSVS SIRSSVDTFP FRPGNLMMND QPSQPISTTN 480 FGLKTQSSNN LSCISDLESY QRNLLFGGEA ASAAPLDEDL YFYWHNMNFG QPNIGMSEYY 540 DPGLLTEVPN HLYDSADYLV IDQGLFIA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 7e-17 | 195 | 257 | 1 | 63 | ARR10-B |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00010 | PBM | Transfer from AT1G67710 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA34491 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT140505 | 0.0 | BT140505.1 Medicago truncatula clone JCVI-FLMt-22H12 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003601849.1 | 0.0 | two-component response regulator ARR11 isoform X1 | ||||
TrEMBL | A0A2K3NTV0 | 0.0 | A0A2K3NTV0_TRIPR; Two-component response regulator ARR11-like protein | ||||
STRING | AES72100 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3999 | 33 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67710.1 | 1e-122 | response regulator 11 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA34491 |