PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA34456
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 593aa    MW: 65933 Da    PI: 4.6365
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA34456genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS450.21.4e-1372235922374
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                                ++lL+ecA a+s+g+  +a+a++  l++++s +gdp +R+aay++e+Laarla+s++++ykal+++e +   +s++laa+++++
  Tp57577_TGAC_v2_mRNA34456 223 KQLLYECASALSEGNEVKASAMIDDLRQMVSIQGDPSTRIAAYMVEGLAARLASSGKSIYKALRCKEPP---TSDRLAAMQILF 303
                                589*****************************************************************9...9*********** PP

                       GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLak 167
                                ev+P++kf++++aN aI ea++ +++vHiiDfdi+qG Q+++L+q+LasRp++pp +R+Tgv++pes+  s   l+ +g+rL+k
  Tp57577_TGAC_v2_mRNA34456 304 EVCPCFKFGFIAANGAIAEAIKDDKKVHIIDFDINQGSQYITLIQTLASRPGKPPFVRLTGVDDPESVqrSVGGLSIIGQRLEK 387
                                ******************************************************************99889999********** PP

                       GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251
                                +Ae lg+pfef++ va++ + +++++L+++pgEa++Vn+++qlh++ desvs+ +erd++L++vksl+Pk+v+vveq++++n++
  Tp57577_TGAC_v2_mRNA34456 388 LAEVLGLPFEFRA-VASSSSVVTPSMLNCRPGEAIVVNFAFQLHHMRDESVSTVNERDQLLRMVKSLNPKLVTVVEQDVNTNTS 470
                                *************.799******************************************************************* PP

                       GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                                +Fl rf+ea +yysa+f+sl+a+lpres++r++vEr++l+r+ivn++aceg++r+er e ++kWr+rl++aGF++ p+se++++
  Tp57577_TGAC_v2_mRNA34456 471 PFLPRFVEAYNYYSAVFESLDATLPRESQDRVNVERQCLARDIVNIIACEGEDRIERYEVAGKWRARLKMAGFTSSPMSENVEE 554
                                ************************************************************************************ PP

                       GRAS 336 qaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                 +k l+r++ +  y++++e g+l +gW+d++L+++SaW+
  Tp57577_TGAC_v2_mRNA34456 555 AIKELIRQYCD-KYKIKQEMGALHFGWEDKNLIVASAWK 592
                                **********5.5*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.569196573IPR005202Transcription factor GRAS
PfamPF035144.7E-135223592IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MSLIISPELA DASYRNAKLY SLKGTDVTPG LSSHNFAPDK HRNMYMNDSY SSESYEKYFL  60
DSPTEELIEP SSSGISGNSV HADSDSSYQL RANSGGSMVT DNPFDTYVSS TRKRDAYQSN  120
FESDLFENES PDCFEFDGEM RLKLQELERA LLGDNNDDCD DDGENIFRTV QSMDIDPDFA  180
ECANPAQKMS LHDSPKESLS SDSNLSCSSS CKEISQKSPR TPKQLLYECA SALSEGNEVK  240
ASAMIDDLRQ MVSIQGDPST RIAAYMVEGL AARLASSGKS IYKALRCKEP PTSDRLAAMQ  300
ILFEVCPCFK FGFIAANGAI AEAIKDDKKV HIIDFDINQG SQYITLIQTL ASRPGKPPFV  360
RLTGVDDPES VQRSVGGLSI IGQRLEKLAE VLGLPFEFRA VASSSSVVTP SMLNCRPGEA  420
IVVNFAFQLH HMRDESVSTV NERDQLLRMV KSLNPKLVTV VEQDVNTNTS PFLPRFVEAY  480
NYYSAVFESL DATLPRESQD RVNVERQCLA RDIVNIIACE GEDRIERYEV AGKWRARLKM  540
AGFTSSPMSE NVEEAIKELI RQYCDKYKIK QEMGALHFGW EDKNLIVASA WK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-6722859124377Protein SCARECROW
5b3h_D1e-6722859124377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA34456
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013466432.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A2K3NYM70.0A0A2K3NYM7_TRIPR; SCARECROW-like protein 1-like
STRINGXP_007161385.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49883457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]