PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA3443
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family AP2
Protein Properties Length: 330aa    MW: 37529.1 Da    PI: 7.3416
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA3443genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2409.8e-134197155
                       AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                              s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa+a++ a++k++g
  Tp57577_TGAC_v2_mRNA3443 41 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQSKKGRQGAYDDEEAAARAYDLAALKYWG 97
                              57*******************99998888888888********************98 PP
2AP250.17e-16140191155
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Tp57577_TGAC_v2_mRNA3443 140 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDVAAIQYRG 191
                               89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.92E-1541107IPR016177DNA-binding domain
PfamPF008471.1E-84197IPR001471AP2/ERF domain
PROSITE profilePS5103218.42642105IPR001471AP2/ERF domain
SMARTSM003803.5E-2142111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-1242106IPR001471AP2/ERF domain
PRINTSPR003672.6E-64354IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-18140201IPR016177DNA-binding domain
CDDcd000181.03E-23140201No hitNo description
PfamPF008477.7E-12140191IPR001471AP2/ERF domain
SMARTSM003806.5E-26141205IPR001471AP2/ERF domain
PROSITE profilePS5103218.386141199IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-18141200IPR001471AP2/ERF domain
PRINTSPR003672.6E-6181201IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MAKKSQKSHK TTSSNSSSTT TTMVKRKRKS IQRTSPPQRS SIYRGVTRHR WTGRYEAHLW  60
DKNCWNESQS KKGRQGAYDD EEAAARAYDL AALKYWGQET ILNFQVSNYQ EELKEMEGQS  120
KEEYIGSLRR KSSGFSRGVS KYRGVARHHH NGRWEARIGR VFGNKYLYLG TYATQEEAAT  180
AYDVAAIQYR GLNAVTNFDL SRYSNWLGPK TQDNNDNNNH NNQNSSNNQE LDLNQELDVS  240
ATSASSAFGH ILKSSKFTEM IEKTLPDEIE DSYTPPSSES TPPRRTFPED IQTIFETQDS  300
SIYTENDDDI IFGELSSFAA PIFHYGLDV*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA3443
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024638330.11e-178AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-116AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A072UFX21e-179A0A072UFX2_MEDTR; AP2-type transcription factor
STRINGXP_004507033.11e-173(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.12e-93ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]