PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA34401 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | Whirly | ||||||||
Protein Properties | Length: 258aa MW: 28449.4 Da PI: 9.2821 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 203.8 | 2.1e-63 | 80 | 217 | 1 | 138 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakg 84 s+yk+kaal++ ++ p+f ldsg+ k++r+G +ll++a++ ++r+ydW+ kq+f+ls++e++ +++l+ +esceffhdp++++ Tp57577_TGAC_v2_mRNA34401 80 SIYKGKAALTITPRPPEFAPLDSGAYKITRDGYVLLQFAPSLGPRQYDWNSKQVFSLSVAEMGGVISLGGRESCEFFHDPFMGK 163 7*********************************************************************************** PP Whirly 85 sneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsll 138 s+eGkvrk+lkvePlpdGsG+f+nl+v+n++++++es+ +P+skae avlrs++ Tp57577_TGAC_v2_mRNA34401 164 SDEGKVRKVLKVEPLPDGSGFFFNLNVQNKIINADESINIPISKAELAVLRSIF 217 ****************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 4.6E-74 | 69 | 237 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 6.75E-72 | 73 | 257 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 1.5E-59 | 81 | 216 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0032211 | Biological Process | negative regulation of telomere maintenance via telomerase | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045910 | Biological Process | negative regulation of DNA recombination | ||||
GO:0009508 | Cellular Component | plastid chromosome | ||||
GO:0009570 | Cellular Component | chloroplast stroma | ||||
GO:0003697 | Molecular Function | single-stranded DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0042162 | Molecular Function | telomeric DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MSHLQLQLHS QAPPSLFSSS LSSLKFFSNK NSFSPTNSLP FKPLTIRCRH SDVFETRTNV 60 SSPNPNPVGA LPPRVYVGHS IYKGKAALTI TPRPPEFAPL DSGAYKITRD GYVLLQFAPS 120 LGPRQYDWNS KQVFSLSVAE MGGVISLGGR ESCEFFHDPF MGKSDEGKVR KVLKVEPLPD 180 GSGFFFNLNV QNKIINADES INIPISKAEL AVLRSIFKYI MPYLLGWHTF ANSINPECSA 240 VANNANPTYG GDYEWSR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1l3a_A | 8e-97 | 49 | 256 | 12 | 219 | p24: plant transcriptional regulator PBF-2 |
1l3a_B | 8e-97 | 49 | 256 | 12 | 219 | p24: plant transcriptional regulator PBF-2 |
1l3a_C | 8e-97 | 49 | 256 | 12 | 219 | p24: plant transcriptional regulator PBF-2 |
1l3a_D | 8e-97 | 49 | 256 | 12 | 219 | p24: plant transcriptional regulator PBF-2 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts, maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. In nucleus, modulates telomere length homeostasis by inhibiting the action of the telomerase at the extreme termini of chromosomes. Is recruited to a distal element upstream of the kinesin KP1 to mediate the transcriptional repression of KP1. Is required for full salicylic acid-dependent plant disease resistance responses. Can bind double-stranded DNA in vivo. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:17217467, ECO:0000269|PubMed:19666500, ECO:0000269|PubMed:19669906, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:21911368}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA34401 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA) and infection by H.parasitica. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:19669906}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004514779.1 | 1e-139 | single-stranded DNA-binding protein WHY1, chloroplastic-like | ||||
Swissprot | Q9M9S3 | 1e-109 | WHY1_ARATH; Single-stranded DNA-binding protein WHY1, chloroplastic | ||||
TrEMBL | A0A1S2Z484 | 1e-138 | A0A1S2Z484_CICAR; single-stranded DNA-binding protein WHY1, chloroplastic-like | ||||
STRING | XP_004514779.1 | 1e-138 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6416 | 32 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14410.1 | 1e-111 | ssDNA-binding transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA34401 |