PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA3438 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 278aa MW: 32753.4 Da PI: 8.281 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.5 | 5.6e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+ey++ Tp57577_TGAC_v2_mRNA3438 9 KRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYAT 59 79***********************************************86 PP | |||||||
2 | K-box | 15.1 | 9.7e-07 | 75 | 112 | 1 | 38 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhl 38 y++++ +s++++ + +++ e+++Lk++i+ Lqr+ R + Tp57577_TGAC_v2_mRNA3438 75 YAERQLVSNDSESQGNWTIEYTRLKAKIDLLQRNYRYM 112 66788888899999********************9977 PP | |||||||
3 | K-box | 83.9 | 3.4e-28 | 144 | 209 | 35 | 100 |
K-box 35 qRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +Rh++GedL+s+slkeLq+LeqqL+++lk iR+++n+l++e+i+elqkkek +qe+n++L kk++e Tp57577_TGAC_v2_mRNA3438 144 NRHYMGEDLGSMSLKELQSLEQQLDTALKLIRTRRNQLMYESISELQKKEKVIQEQNNMLAKKIKE 209 5**************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.394 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.7E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.01E-34 | 2 | 92 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.04E-42 | 2 | 79 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.4E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 14.452 | 88 | 219 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.0E-23 | 143 | 207 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009933 | Biological Process | meristem structural organization | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MGRGRVQLKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVALIVFSH KGKLFEYATD 60 SCMEKILERY ERYSYAERQL VSNDSESQGN WTIEYTRLKA KIDLLQRNYR YMLIFIIIVY 120 FVVDQFLTFI TSLTEFYDTD PLYNRHYMGE DLGSMSLKEL QSLEQQLDTA LKLIRTRRNQ 180 LMYESISELQ KKEKVIQEQN NMLAKKIKEK EKFAAQQQQA QWENPNHHGV NPNYLLQQQH 240 PSLNMGGNYR EDQAQEMGRN ELDLTLEPLY TCHLGCF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 2e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 2e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 2e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 2e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 2e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 2e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 2e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00096 | ChIP-seq | Transfer from AT1G69120 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA3438 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF461740 | 1e-165 | AF461740.1 Pisum sativum MADS-box transcription factor MADS4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003628742.1 | 1e-152 | truncated transcription factor CAULIFLOWER A | ||||
Swissprot | Q6E6S7 | 1e-123 | AP1_VITVI; Agamous-like MADS-box protein AP1 | ||||
TrEMBL | G7LGW9 | 1e-151 | G7LGW9_MEDTR; MADS-box transcription factor | ||||
STRING | AET03218 | 1e-151 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF588 | 32 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 1e-102 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA3438 |
Publications ? help Back to Top | |||
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