PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA34351
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 350aa    MW: 40170.3 Da    PI: 5.7112
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA34351genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.1e-13143194155
                                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Tp57577_TGAC_v2_mRNA34351 143 QRMTHIAVERNRRKQMNQYLSVLRSLMPES---YVQRGDQASIIGGAINFVKKLE 194
                                79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.83E-12141198No hitNo description
PROSITE profilePS5088815.059142193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-15142204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-13142198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-10143194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-9148199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MCLPEEERER EKAMALEPTL LYQHQQQDPF TYGFNKDLYN YNLLTDFEAN SFDYSTCNFN  60
LQNDQQQQGS VSTFINNQTE SYPFQTNNCS SSEQPPLLLP QMDEVETLHV TNPCLEDSSI  120
STRCRPKKRR VKTSKNKEEI ENQRMTHIAV ERNRRKQMNQ YLSVLRSLMP ESYVQRGDQA  180
SIIGGAINFV KKLEQRLQFL GVQKQKEEKI DTIVANKNKP FSEFFTFPQY STNAIVCENS  240
EANNGEIEKM GEVQTSNIAD VEVTMVESHA NLKIRSKKRP KQLLKMVSSL HGMCLTILHL  300
NVTTTDEFVF YSLSVKVEDN CKLGSVDEIA AAVYQMLERI HQESSSILN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126131KKRRVK
2143154RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA34351
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1502441e-109AC150244.2 Medicago truncatula chromosome 7 clone mth2-180p14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003626318.21e-180transcription factor bHLH96
TrEMBLA0A2K3LGR40.0A0A2K3LGR4_TRIPR; Transcription factor bHLH96-like protein
STRINGAES825361e-170(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.16e-83bHLH family protein