PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA34236
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 440aa    MW: 49021.9 Da    PI: 6.5884
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA34236genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.76.3e-063303681154
                                HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                 R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Tp57577_TGAC_v2_mRNA34236 330 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 368
                                5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.582319368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-11329383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.92E-7329372No hitNo description
SMARTSM003530.0049330374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-9333376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MADDDQFHNS SGNWWDTASR NIRFDHQSGG TSQSSNSSAI TNNNNIVDFG WQNSDMVEIK  60
PRSSMENSFH DTQKLQQNQD SSTSSDPNLH MMGLGLSSHS MDWNQPSLIR GEKGADNSFS  120
TMLQENLSST RNNFEQENVM GICQQVNRSN FSLDQNQFSP QYSSGDSNVI TSQCLPTNFQ  180
MDSSTLYGTP PPILQGSFEN RSMSSFPYPT NNYGLNSNNE LNMNMPSNDW SNKVPQFLMR  240
TSPPKQPTNN QLHFTNNTPF WNASHEGANS IKDVRSSFFP SLQPQFSTPN FDQHSKNISE  300
VNTVVKKSGS EPAPKRTRNE TPSTLPAFKV RKEKMGDRIT ALQQLVSPFG KTDTASVLSE  360
AIEYIKFLHE QVTVLSTPYM KSGAPIEIHQ NSSKSKKSES AKQDLKSRGL CLVPVSSTFP  420
VTHETTVDFW TPTFGGTSR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA34236
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003596544.10.0transcription factor bHLH123 isoform X1
SwissprotQ8GXT34e-75BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A2K3L0B80.0A0A2K3L0B8_TRIPR; Transcription factor bHLH123-like protein (Fragment)
STRINGAES667950.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.31e-48bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]