PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA3422

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bHLH

Protein Properties

Length: 358aa MW: 41143.7 Da PI: 7.583

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA3422	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.3	2.7e-13	125	176	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r +h +Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i+ A+e++k+L+ Tp57577_TGAC_v2_mRNA3422 125 QRITHITVERNRRKQMNEHLAVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 176 699*************************...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	6.5E-13	123	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.79E-12	123	180	No hit	No description
SuperFamily	SSF47459	1.09E-15	123	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.589	124	175	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-10	125	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-9	130	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MKIEDSSCNT MALETLSSCN EFSNFIIYDT ISATPFSSNT NTTEYSGFLE NTMNNNYEEN 60 IHHEATIFDH SNFSMMNNRK RQLMEQEETM KEMNNNNNSN NQVVQRKKRR RKPRVCKNKE 120 EAETQRITHI TVERNRRKQM NEHLAVLRSL MPESYVQRGD QASIVGGAIE FVKELEHLLQ 180 SLEARKLQQL QQELAQQQSN NIEDTSNSVV SKQIMKPPFA QFFVYPQYTW SQTPNKYTSK 240 TKAAIADIEV TLIETHANLR ILTRTRPGQL TKLVAGFQSL FFTILHLNVT TLQPLVFYSI 300 SAKVCNFPSF YIRKFSLLFQ LFVVVEEGFQ LGSVDGIATA VHHLLGRIEE ETSLICC*

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MKIEDSSCNT MALETLSSCN EFSNFIIYDT ISATPFSSNT NTTEYSGFLE NTMNNNYEEN  60
IHHEATIFDH SNFSMMNNRK RQLMEQEETM KEMNNNNNSN NQVVQRKKRR RKPRVCKNKE  120
EAETQRITHI TVERNRRKQM NEHLAVLRSL MPESYVQRGD QASIVGGAIE FVKELEHLLQ  180
SLEARKLQQL QQELAQQQSN NIEDTSNSVV SKQIMKPPFA QFFVYPQYTW SQTPNKYTSK  240
TKAAIADIEV TLIETHANLR ILTRTRPGQL TKLVAGFQSL FFTILHLNVT TLQPLVFYSI  300
SAKVCNFPSF YIRKFSLLFQ LFVVVEEGFQ LGSVDGIATA VHHLLGRIEE ETSLICC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	104	110	QRKKRRR
2	105	111	RKKRRRK
3	105	112	RKKRRRKP
4	106	111	KKRRRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA3422

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC148237	1e-118	AC148237.7 Medicago truncatula chromosome 8 clone mth2-1o14, complete sequence.
GenBank	AC149639	1e-118	AC149639.23 Medicago truncatula chromosome 8 clone mth2-154b23, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003628791.2	1e-173	transcription factor bHLH94
Swissprot	Q9C7T4	2e-64	BH096_ARATH; Transcription factor bHLH96
TrEMBL	A0A396GLS4	1e-171	A0A396GLS4_MEDTR; Putative transcription factor bHLH family
STRING	AET03267	1e-168	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10644	31	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	5e-64	bHLH family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA3422

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]