PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA34090
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 681aa    MW: 78352.4 Da    PI: 9.7249
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA34090genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR141.15.8e-1350162190
                       FAR1   1 kfYneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkk..................tekerrtraetrtgC 62 
                                kfY +YA + GFs+r+  ++++    + +++i   ++ C+k+g+++ +  +                        +++e+r+gC
  Tp57577_TGAC_v2_mRNA34090  50 KFYGDYALKSGFSIRILLKSRNnsqnQPTDKIHYLRYGCNKQGYKKGSLLDpknkpksespvvvefexxXXXXXXEKPEERVGC 133
                                6*************986555554444778899999**********988777778899999999999988778888********* PP

                       FAR1  63 kaklkvkkek.dgkwevtkleleHnHela 90 
                                +a + +k+++  ++++++k +  H H+l 
  Tp57577_TGAC_v2_mRNA34090 134 TAAIFLKLDEtLNVFKIYKWDVPHCHPLH 162
                                *********9899**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-1050162IPR004330FAR1 DNA binding domain
PfamPF044344.0E-5470496IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.373470504IPR007527Zinc finger, SWIM-type
SMARTSM005755.7E-4479506IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MDLTSTSSGI AQMPVVDSSD TLADSLQCYY PTKKETWESL AFKSVEEVEK FYGDYALKSG  60
FSIRILLKSR NNSQNQPTDK IHYLRYGCNK QGYKKGSLLD PKNKPKSESP VVVEFEXXXX  120
XXXXEKPEER VGCTAAIFLK LDETLNVFKI YKWDVPHCHP LHKPKHGCYL RSFRRVNEVQ  180
GQLAVINSKA GMSMRTSYEV MGQGVGGTDN LPFRFSDLKN YLMTNRQKEM LVGXXXXXXX  240
XXXXXXXDFF RNEALSLVXX XXXXXXXXXV TLIYAFFCSD LVHFYISAAF MGFDNHRTSV  300
LFGAALLYDE TATTFDWLFT TFLKYFDYNW DQMMKTCFDG RPTADFKWLV QTYRNRMHWS  360
SAWVKSHFTA GLKTTQLSES FNAFLRRFLQ PDHSLVIFFN HFNIMVQRMR DNHTELDFKA  420
ANTRAKNNYP XXXXXXXXXX XXXXXXXXXX XXXXLSPNFE KHDRLDERLV TIDIRAKRIS  480
CTCRMFENRG FLCRHVFKIL EFFGGSVQYH GLKTIPAEYV LKRWCRDVRQ SVKSTINVAT  540
EGATQAQRYQ QICAVTVKLC TRVCADPEAS QIFLNGVLEA GRKAEELLTS KGIHTVQSSV  600
TPSKSSSVTP SKSCNTAAVS EASDAQKSTG PKFKKRPNPI RSKKRLKSDY ELAREYQKFL  660
IHRKRKQRGA EDLKGKEAAD *
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA34090
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024634480.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2Z6PJC01e-130A0A2Z6PJC0_TRISU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14214215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.12e-23FAR1 family protein