PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA34006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | LBD | ||||||||
Protein Properties | Length: 177aa MW: 19645.2 Da PI: 5.1606 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 140.9 | 4.2e-44 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +Ca+Ck+lrr+C+++C++apyfp+++p+kfa+vhk+FGasn++k+l++lp ++r +a++slvyeA+ar+rdPvyG+vg i+ lq Tp57577_TGAC_v2_mRNA34006 7 PCASCKLLRRRCTQECIFAPYFPSDDPRKFAIVHKVFGASNISKMLQELPIHQRVEAVNSLVYEANARVRDPVYGCVGAISYLQ 90 7*********************************************************************************** PP DUF260 85 qqleqlkaelallkee 100 +q++ql+ +la++++e Tp57577_TGAC_v2_mRNA34006 91 SQVSQLQMQLAVAQAE 106 ************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.757 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.2E-43 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MGSGSSPCAS CKLLRRRCTQ ECIFAPYFPS DDPRKFAIVH KVFGASNISK MLQELPIHQR 60 VEAVNSLVYE ANARVRDPVY GCVGAISYLQ SQVSQLQMQL AVAQAEILCI QMQQDSATVT 120 DSLPTHVDQD DKFMLLSENN NCYGVLPQYL NFPSSSSSSS NVFQDYEPLK SETFWT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-47 | 2 | 108 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-47 | 2 | 108 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA34006 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU651581 | 1e-135 | CU651581.9 M.truncatula DNA sequence from clone MTH2-66L10 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003599327.1 | 1e-113 | LOB domain-containing protein 12 | ||||
Swissprot | Q8LBW3 | 3e-75 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A2Z6MVB3 | 1e-126 | A0A2Z6MVB3_TRISU; Uncharacterized protein | ||||
STRING | AES69578 | 1e-113 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1664 | 34 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 7e-63 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA34006 |
Publications ? help Back to Top | |||
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