PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA33916 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MYB_related | ||||||||
Protein Properties | Length: 199aa MW: 22021.2 Da PI: 5.6054 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.5 | 2.6e-07 | 27 | 48 | 24 | 46 |
HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqk 46 W+ Ia++++ gRt++++k++w++ Tp57577_TGAC_v2_mRNA33916 27 WSIIASKLQ-GRTDNDVKNYWNT 48 9********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.679 | 1 | 50 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.39E-6 | 25 | 56 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-10 | 25 | 54 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.12E-4 | 27 | 50 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MWTVSDQYRT VHIQGSADLS LIKIKWWSII ASKLQGRTDN DVKNYWNTKL KKKFMFINHS 60 MEMKSQQVTL LSILQSSTST SQSLSFTSNK NNSYYHHSNG SFTSSFSNSS TSSSLLSGNS 120 STSAAQESFI GSSQKCGDAA FVEQNIGDVS YIYEVEDSEK LMFSNGGSVN GFWEENPLDY 180 GVISTTSTSS CNNFLFDE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA33916 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF468479 | 3e-45 | EF468479.1 Medicago truncatula MYB transcription factor MYB37 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003625681.1 | 1e-55 | transcription factor RAX2 | ||||
TrEMBL | A0A2K3LP21 | 5e-61 | A0A2K3LP21_TRIPR; MYB transcription factor-like protein | ||||
STRING | AES81899 | 5e-55 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36890.1 | 6e-07 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA33916 |