PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA33818
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 250aa    MW: 28857.1 Da    PI: 9.0567
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA33818genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.5e-1369121155
                                CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                ++ +hn+ Er RR+++N+ ++ Lr+llP  +   + kK+s   +  ++ +YI +Lq
  Tp57577_TGAC_v2_mRNA33818  69 KKLNHNASERDRRKKVNNLISSLRSLLPGeD---QTKKMSIPVTISRVLKYIPELQ 121
                                6789*************************66...8888***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.15168120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.3E-1469138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.88E-1069125No hitNo description
PfamPF000103.0E-1069121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-1169124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-974126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MVAFCSPQFS YSNMGWFLEE LEPESLLISH KQKNYVSLEY SLPHNEFSSP IKQDVEDIER  60
SQSPKLMVKK LNHNASERDR RKKVNNLISS LRSLLPGEDQ TKKMSIPVTI SRVLKYIPEL  120
QKQVEGLIKK KEDFLSRISR QEYAVNKESS QRKIPIYNSS FIVSTSRLND IELAIHISSY  180
EANKIPLSEI LMCLEDNGLF LLNSSSSKTF GGRLFYNLHF QVEKTQRLEC DALIQKLLSI  240
CEKQRSNQY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA33818
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493429.11e-134transcription factor bHLH100
TrEMBLA0A1S2XRJ61e-132A0A1S2XRJ6_CICAR; transcription factor bHLH100
STRINGXP_004493429.11e-133(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24023379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.14e-52bHLH family protein