PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA33749 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | GeBP | ||||||||
Protein Properties | Length: 404aa MW: 44425.2 Da PI: 4.8368 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 76.9 | 3.4e-24 | 201 | 287 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehd 85 qrl+se+De+++L+Gl df +kt+k+p +d af+ fvkk +s+++s+ ql K+r LKkKf++ sf+k+hd Tp57577_TGAC_v2_mRNA33749 201 STQRLFSEQDELTILKGLADFISKTKKDPLKDALAFHGFVKKWLSAEASSAQLKRKVRTLKKKFETS---------DSFTKPHD 275 679*************************************************************864.........368***** PP DUF573 86 qkifelskkiWg 97 +k+fe+ kk+Wg Tp57577_TGAC_v2_mRNA33749 276 KKAFEFFKKVWG 287 ***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 9.4E-21 | 203 | 287 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MAPKKRPTSP PLEDDQKPST QKQPEDKVAH EEEEDEEDED DSSEEEEEEG SSSEEEEEEK 60 DQSQTASKNP PPSTPISNPK PASESESESG SESGSDSGPG SESETDSQPE PTPPLNPKVV 120 KPLASKPMKA QPKAQTQAQT YSILARSGTK RAAENGNDSN RSKKKTTAVA VTVTTGGDSD 180 DENENETEED VKLTGEDSKK STQRLFSEQD ELTILKGLAD FISKTKKDPL KDALAFHGFV 240 KKWLSAEASS AQLKRKVRTL KKKFETSDSF TKPHDKKAFE FFKKVWGNTG ANEAEENGKV 300 NGKSVKKELV ISTKKEAAKV KTVVDNSLIV SELIRFGVVA GSSVLNKDAL ERGLELIEES 360 KRVEFVEKWK QVQIAEMELL VRRSQLAKEQ FNLLLQALKK SSK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA33749 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003593377.1 | 1e-119 | probable transcription factor At4g00390 | ||||
TrEMBL | A0A2K3M7J4 | 1e-179 | A0A2K3M7J4_TRIPR; Mediator-associated protein 1-like (Fragment) | ||||
STRING | AES63628 | 1e-118 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 3e-22 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA33749 |