PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA33749
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GeBP
Protein Properties Length: 404aa    MW: 44425.2 Da    PI: 4.8368
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA33749genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57376.93.4e-24201287297
                     DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehd 85 
                                  qrl+se+De+++L+Gl df +kt+k+p +d  af+ fvkk +s+++s+ ql  K+r LKkKf++           sf+k+hd
  Tp57577_TGAC_v2_mRNA33749 201 STQRLFSEQDELTILKGLADFISKTKKDPLKDALAFHGFVKKWLSAEASSAQLKRKVRTLKKKFETS---------DSFTKPHD 275
                                679*************************************************************864.........368***** PP

                     DUF573  86 qkifelskkiWg 97 
                                +k+fe+ kk+Wg
  Tp57577_TGAC_v2_mRNA33749 276 KKAFEFFKKVWG 287
                                ***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045049.4E-21203287IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MAPKKRPTSP PLEDDQKPST QKQPEDKVAH EEEEDEEDED DSSEEEEEEG SSSEEEEEEK  60
DQSQTASKNP PPSTPISNPK PASESESESG SESGSDSGPG SESETDSQPE PTPPLNPKVV  120
KPLASKPMKA QPKAQTQAQT YSILARSGTK RAAENGNDSN RSKKKTTAVA VTVTTGGDSD  180
DENENETEED VKLTGEDSKK STQRLFSEQD ELTILKGLAD FISKTKKDPL KDALAFHGFV  240
KKWLSAEASS AQLKRKVRTL KKKFETSDSF TKPHDKKAFE FFKKVWGNTG ANEAEENGKV  300
NGKSVKKELV ISTKKEAAKV KTVVDNSLIV SELIRFGVVA GSSVLNKDAL ERGLELIEES  360
KRVEFVEKWK QVQIAEMELL VRRSQLAKEQ FNLLLQALKK SSK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA33749
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003593377.11e-119probable transcription factor At4g00390
TrEMBLA0A2K3M7J41e-179A0A2K3M7J4_TRIPR; Mediator-associated protein 1-like (Fragment)
STRINGAES636281e-118(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18313490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.13e-22DNA-binding storekeeper protein-related transcriptional regulator