PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA33639
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 120aa    MW: 14047.4 Da    PI: 10.8234
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA33639genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.7e-1663110148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                +++WTt Ed  lv++v+q+G+  W  Iar m   R +kqck+rw+++l
  Tp57577_TGAC_v2_mRNA33639  63 KKKWTTNEDIELVKLVRQHGMQKWYQIARSMKGARNPKQCKERWLNHL 110
                                689*****************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.98153114IPR017930Myb domain
SMARTSM007171.3E-1162112IPR001005SANT/Myb domain
SuperFamilySSF466896.03E-1663116IPR009057Homeodomain-like
CDDcd001673.49E-1165110No hitNo description
Gene3DG3DSA:1.10.10.604.9E-1865115IPR009057Homeodomain-like
PfamPF139215.0E-1466115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MEFNLRNQVK HPKILNLFPE YPCLKHEIHT AQSSTLIAPP QSNPNDHLNP NNRNRLKGLL  60
SPKKKWTTNE DIELVKLVRQ HGMQKWYQIA RSMKGARNPK QCKERWLNHL NPDIKVIIK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA33639
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010535405.11e-13PREDICTED: myb-related protein 315
STRINGXP_010535405.15e-13(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF143361018
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.13e-15myb domain protein 119