PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA33638
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family TALE
Protein Properties Length: 610aa    MW: 68418 Da    PI: 7.3631
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA33638genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.61.1e-093944311954
                                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                Fe   ++yp+ +++  LAk++gL+ +qV++WF N R +
  Tp57577_TGAC_v2_mRNA33638 394 FEHflHPYPTDTDKIMLAKQTGLSRSQVSNWFINARVR 431
                                554459******************************88 PP
2BELL98.94.1e-32267332772
                       BELL   7 kkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                                + k++Ll++l+eV+krY+qy++q+q v+ sFe v gl++a+pY+slA ka+S+hFrcLk ai++q+
  Tp57577_TGAC_v2_mRNA33638 267 RNKSRLLTMLDEVYKRYRQYYQQMQSVVTSFEYVSGLNNAAPYASLAIKAMSKHFRCLKKAITDQL 332
                                579************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.6E-42204330IPR006563POX domain
PfamPF075261.6E-35209329IPR006563POX domain
PROSITE profilePS5007112.098372435IPR001356Homeobox domain
SMARTSM003891.5E-10375439IPR001356Homeobox domain
CDDcd000863.12E-12375436No hitNo description
SuperFamilySSF466892.35E-17377442IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-28378439IPR009057Homeodomain-like
PfamPF059204.7E-19392431IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MASDEGFEGY HVPQQSRRDK LRVVVAQNQS NEPLLPFYDS SSFITNFNQQ QGLKQNSCSS  60
SNSMKDLECS NLMMRFSREE GKRVMNNNNI SSTSSNHPYF ETLNHNNQAN NNINNPFFYQ  120
AQNIQNLRNF DEQQHSSTST MMLNNHEPLS LSLSSNKSVS SNLPLELNLQ RYGSMIYGGG  180
GMIQGLVEGG GGGGGGSGGS VPFTGYASVL KDSRFLKPAQ ELLEEICDVG GRGFCSEKIV  240
VLADSSLMME SPLERLSEED PFGDDGRNKS RLLTMLDEVY KRYRQYYQQM QSVVTSFEYV  300
SGLNNAAPYA SLAIKAMSKH FRCLKKAITD QLQYSNKAHF HTSNRKDESP RFGNSERGGP  360
YGHRSGFLEQ QQPVWRPQRG LPERAVTVLR AWLFEHFLHP YPTDTDKIML AKQTGLSRSQ  420
VSNWFINARV RLWKPMVEEI HMLETRQTPK DSQKEESSRN KSSDHHHLPS DTSLLSDNPS  480
TSTDKFQDVA YKRAINEIPN IPIRNQAQQH HQQQQMNLPF QQVGVGMNIG SGSNNNNNSN  540
SNSNVSLTLG LYQNHGIGLA EPFPLSAAQR FGLGLETSNE GYVMSGFESQ NRHFGRDVIG  600
GQMFHDFVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-15381439563Homeobox protein Meis2
3k2a_B1e-15381439563Homeobox protein Meis2
4xrs_A1e-15381438158Homeobox protein Meis1
4xrs_B1e-15381438158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA33638
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013454907.10.0BEL1-like homeodomain protein 9
SwissprotQ9LZM81e-114BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLA0A072USU80.0A0A072USU8_MEDTR; BEL1-like homeodomain protein
STRINGXP_004507197.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28103373
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.11e-87TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]