PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA33634

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Dof

Protein Properties

Length: 374aa MW: 41167.8 Da PI: 7.701

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA33634	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.1	3.5e-37	105	164	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+++cprC+s +tkfCy+nny+++qPr+fC++C+ryWt+GG++rnv vG+grrknk+ Tp57577_TGAC_v2_mRNA33634 105 PDKIVQCPRCNSFDTKFCYFNNYNVNQPRHFCRNCHRYWTAGGTMRNVAVGAGRRKNKHI 164 7899******************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-27	93	162	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-30	107	163	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.307	109	163	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	111	147	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MNGEGDMSVK YHKNSSIMLF GKKIPVPEYH TPATSQKGSQ IPANSTTMND CSNSKQTRIE 60 MPHTQNIEKS KNSSKEENES KVTTSTVEDT METSSTDQDK VLKKPDKIVQ CPRCNSFDTK 120 FCYFNNYNVN QPRHFCRNCH RYWTAGGTMR NVAVGAGRRK NKHIGSQYRN MIVASGGTST 180 ANLETNDSIQ HDNGIFLKFG LDVDASANNG MENREESSSL CVSSVTNGYT RGTELSESEQ 240 NRSKPLQSYP ASSWIIPLNQ SWNNVTSMVQ SSMQMYPTTV QWCHAPMVAN IFTPNIGLQF 300 VPGSYGNGNV SIGSNGCISP SSSTTSNSLC SGNGSPILGK HTRDSVLTDE EKPEMEMRVF 360 APKALRIDET NLE*

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MNGEGDMSVK YHKNSSIMLF GKKIPVPEYH TPATSQKGSQ IPANSTTMND CSNSKQTRIE  60
MPHTQNIEKS KNSSKEENES KVTTSTVEDT METSSTDQDK VLKKPDKIVQ CPRCNSFDTK  120
FCYFNNYNVN QPRHFCRNCH RYWTAGGTMR NVAVGAGRRK NKHIGSQYRN MIVASGGTST  180
ANLETNDSIQ HDNGIFLKFG LDVDASANNG MENREESSSL CVSSVTNGYT RGTELSESEQ  240
NRSKPLQSYP ASSWIIPLNQ SWNNVTSMVQ SSMQMYPTTV QWCHAPMVAN IFTPNIGLQF  300
VPGSYGNGNV SIGSNGCISP SSSTTSNSLC SGNGSPILGK HTRDSVLTDE EKPEMEMRVF  360
APKALRIDET NLE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA33634

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013451513.1	1e-166	uncharacterized protein LOC25495812
TrEMBL	A0A2K3LVU5	0.0	A0A2K3LVU5_TRIPR; Dof zinc finger protein
STRING	XP_004489646.1	1e-149	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3502	31	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	5e-42	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA33634