PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA33597
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 689aa    MW: 75984.1 Da    PI: 7.7355
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA33597genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.62.8e-08575623348
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                                +WT  E  +l+++v + G+g+W+ I r       +Rt  ++k++w+++l
  Tp57577_TGAC_v2_mRNA33597 575 AWTLVEVMKLIEGVSRCGPGRWSEIKRLSFssySHRTSVDLKDKWRNLL 623
                                7**************************9999**9*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.256568627IPR017930Myb domain
SuperFamilySSF466899.79E-16570630IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-12570626IPR009057Homeodomain-like
SMARTSM007174.7E-9572625IPR001005SANT/Myb domain
CDDcd116606.41E-20574624No hitNo description
PfamPF002495.1E-6575623IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
METVIGIEDN DDGKLEERGV DRSNSALFSP KQISNPVVYK LVRVEGDGRL VPATDDEVME  60
VEDFLEYENS DMRVVADTGQ SLECISIERS SSGKLRLECS EGVSQLGTSE ADLGKLNAKF  120
QYIEQILQKV KQEEKLRLSS RSPVHSHVQI DSQCSADNPV IIEKVHSKTP YQGAPSIASS  180
LNYSHSNQSG SIDQCSRPSE GVIESGSSAS AVNSALTHDF SMTDGEICLD KLSVKELHEL  240
FKVTFGRETT VKDKQWLRRR IAMSLTNSCD VSATTFTVKD KKITRKCEAE SSGNVSAAPV  300
ISVENMAGEG DVKYKDSCVA EDCRVDDNQV ASETRLETLN TEHELGDEDQ QSEERAAKRM  360
RKPTKRYIEE LSENESREYN HRSSSSNKNT GHIHVSPTSN KNTGHRHVSP TSQVRPATNA  420
LPEARTFVTR LDSLGGYGVQ IPCVSRVRRS RPRKTITSLM KFHPTGMVEA AKLGNKVVRD  480
HGSEADSVIQ DKISKPSSMP VKIHQPVRPT ESASDRMSKS TSESGKEKQC PVTVTAEPRQ  540
ESKPKKTDTS SCTEEHNIVT VPTAKGGMRR KHHRAWTLVE VMKLIEGVSR CGPGRWSEIK  600
RLSFSSYSHR TSVDLKDKWR NLLKASFAPT PADEGMNSRK HGTAPIPEPI LVRVRELAEI  660
NSQVPPNFSS SKLTTTGGTV SGDRLGYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1447453RRSRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA33597
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444440.10.0uncharacterized protein LOC11429459 isoform X1
TrEMBLA0A2K3PBP90.0A0A2K3PBP9_TRIPR; MYB family transcription factor
STRINGAET017290.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78493040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-108TRF-like 6