PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA33596
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 684aa    MW: 75499.5 Da    PI: 7.7355
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA33596genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.62.8e-08570618348
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                                +WT  E  +l+++v + G+g+W+ I r       +Rt  ++k++w+++l
  Tp57577_TGAC_v2_mRNA33596 570 AWTLVEVMKLIEGVSRCGPGRWSEIKRLSFssySHRTSVDLKDKWRNLL 618
                                7**************************9999**9*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.256563622IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-12565621IPR009057Homeodomain-like
SuperFamilySSF466899.79E-16565625IPR009057Homeodomain-like
SMARTSM007174.7E-9567620IPR001005SANT/Myb domain
CDDcd116606.76E-20569619No hitNo description
PfamPF002495.1E-6570618IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
METVIGIEDN DDGKLEERGV DRSNSALFSP KQISNPVVYK LVRVEGDGRL VPATDDEVME  60
VEDFLEYENS DMRVVADTGQ SLECISIERS SSGKLRLECS EGTSEADLGK LNAKFQYIEQ  120
ILQKVKQEEK LRLSSRSPVH SHVQIDSQCS ADNPVIIEKV HSKTPYQGAP SIASSLNYSH  180
SNQSGSIDQC SRPSEGVIES GSSASAVNSA LTHDFSMTDG EICLDKLSVK ELHELFKVTF  240
GRETTVKDKQ WLRRRIAMSL TNSCDVSATT FTVKDKKITR KCEAESSGNV SAAPVISVEN  300
MAGEGDVKYK DSCVAEDCRV DDNQVASETR LETLNTEHEL GDEDQQSEER AAKRMRKPTK  360
RYIEELSENE SREYNHRSSS SNKNTGHIHV SPTSNKNTGH RHVSPTSQVR PATNALPEAR  420
TFVTRLDSLG GYGVQIPCVS RVRRSRPRKT ITSLMKFHPT GMVEAAKLGN KVVRDHGSEA  480
DSVIQDKISK PSSMPVKIHQ PVRPTESASD RMSKSTSESG KEKQCPVTVT AEPRQESKPK  540
KTDTSSCTEE HNIVTVPTAK GGMRRKHHRA WTLVEVMKLI EGVSRCGPGR WSEIKRLSFS  600
SYSHRTSVDL KDKWRNLLKA SFAPTPADEG MNSRKHGTAP IPEPILVRVR ELAEINSQVP  660
PNFSSSKLTT TGGTVSGDRL GYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1442448RRSRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA33596
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5607071e-108FJ560707.1 Glycine max transcription factor MYB884 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003627251.20.0uncharacterized protein LOC11429459 isoform X3
TrEMBLA0A2K3PBP90.0A0A2K3PBP9_TRIPR; MYB family transcription factor
STRINGAET017290.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-108TRF-like 6