PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA33594
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family AP2
Protein Properties Length: 451aa    MW: 50901.5 Da    PI: 8.8114
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA33594genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.71.2e-07248287135
                        AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgk 35 
                                s+y+GV++++++gr++A+++d  +   g  ++ ++++lgk
  Tp57577_TGAC_v2_mRNA33594 248 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGK 287
                                78*******************554454477446*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.1E-9248340IPR016177DNA-binding domain
CDDcd000181.00E-17248340No hitNo description
PfamPF008473.5E-4248287IPR001471AP2/ERF domain
PROSITE profilePS5103213.788249338IPR001471AP2/ERF domain
SMARTSM003802.5E-19249344IPR001471AP2/ERF domain
PRINTSPR003675.5E-5250261IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-6311339IPR001471AP2/ERF domain
PRINTSPR003675.5E-5320340IPR001471AP2/ERF domain
SMARTSM003800.015374424IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MSNWLGFSLT PQLRIDEEFG TENQNQNQEH HGEGSEIIGR NYVPTSSHHL HNHLSVMPLR  60
SDGSLCVSDT FTHSVTPQEW RYENAITGGN SNEEPPKLED FLGCYQNQNS KINVNVTPSF  120
CTNNNTEIET RENLTNQALI NSFHQGYNDN NNNNHHGLIH GNNNMYKSWM SQNQFSSDGK  180
NSSDGNGFQS LNLTMSPSVQ NGVSVGVGGA ISTVQVNEDP RKRSLSKSSN AREPVPRKSI  240
DTFGQRTSQY RGVTRHRWTG RYEAHLWDNS CRKEGQTRKG RQVYLGKSHP TYAFILSHSL  300
FTSLPTMSCG YDKEEKAAKA YDLAALKYWG PTTHINFPIS TYEKELEEMK HMTRQEFVAN  360
LRRKSSGFSR GASVYRGVTR HHQHGRWQAR IGRVAGNKDL YLALSLFITI TQEKINYIVV  420
LSSTSLLPSQ SYLLGELPVH LHVYGYLVLV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA33594
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1446451e-135AC144645.17 Medicago truncatula chromosome 8 clone mth2-11e15, complete sequence.
GenBankAC1833041e-135AC183304.14 Medicago truncatula chromosome 8 clone mth2-68f12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024629696.10.0AP2-like ethylene-responsive transcription factor AIL1
TrEMBLG7L6T80.0G7L6T8_MEDTR; AP2 domain transcription factor
STRINGAET017420.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102743137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.13e-77AP2 family protein