PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA33545
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family LBD
Protein Properties Length: 263aa    MW: 28949.9 Da    PI: 7.6615
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA33545genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26097.71.2e-3041081100
                     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79 
                                +C++C+vlr++C++dC ++p++     p++q++++ +++k++G++ +++l+++++e++r+++++sl+ eA+ r+ +PvyG+vg+
  Tp57577_TGAC_v2_mRNA33545   4 SCNGCRVLRKGCSEDCSIRPCLdwikcPQSQANATLFLAKFYGRAGLINLINSASENHRPAIFRSLLHEACGRIVNPVYGSVGL 87 
                                6*********************************************************************************** PP

                     DUF260  80 ilklqqqleqlkaelallkee 100
                                ++++++ql+q+++e++l +e+
  Tp57577_TGAC_v2_mRNA33545  88 LWSGSWQLCQAAVEAVLKGEP 108
                                **************9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.8893109IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-244103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSEDCS IRPCLDWIKC PQSQANATLF LAKFYGRAGL INLINSASEN  60
HRPAIFRSLL HEACGRIVNP VYGSVGLLWS GSWQLCQAAV EAVLKGEPIT PIASEATHGP  120
PFKAYDIRHV AKDDNLDETH RVKTRSQLRR AVKPKPSKKT GSVEDVDRSE SSLSQPGKDS  180
ESGVSVETSI LFHDEPESEA KIYGRAEDGM SNEVGLELRL GFEPVHSCEP REEHVVPIKK  240
RKFNLKDCNA SCKVELGLEF AT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA33545
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1477411e-78AC147741.12 Medicago truncatula clone mth2-17b23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003618732.11e-146LOB domain-containing protein 40
SwissprotQ9M8868e-87LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A2K3P3770.0A0A2K3P377_TRIPR; LOB domain-containing protein 41-like
STRINGAES749501e-145(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.13e-89LOB domain-containing protein 41