PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA33537 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 347aa MW: 40288.9 Da PI: 9.2689 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 49.4 | 5.8e-16 | 11 | 51 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i+ + r +tf kR++g++KK eE +LCd++v++i+++++ Tp57577_TGAC_v2_mRNA33537 11 IQKEKSRRTTFQKRKKGLIKKVEEFAILCDVDVCLILYAPN 51 77788999******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 20.17 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.6E-18 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.58E-20 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.84E-21 | 2 | 77 | No hit | No description |
PRINTS | PR00404 | 4.3E-12 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-17 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-12 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-12 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MGRGRISMEL IQKEKSRRTT FQKRKKGLIK KVEEFAILCD VDVCLILYAP NFEGQGYAEP 60 EIWPKEPKVR KILQKYYNTT NDRRPKIYDV QEYYKERMKK VEFEISKVRK EMLKIMYPTW 120 EESFNSLGEE QMRLFAGLLD AKLDACNQKM NMLKGDVKGK RIAHESHKVD KPNIPYLTSN 180 SNTYFNFMPN NMSLPQIYPP LMNIAEKNPF GFWPLHLGQS SQPSSTLSSA QGSNQMESDE 240 GRYAQSYPGK QVDANWTNWT SQIDANISYD PKTGTKKKNG AENDENLLPY YYNGNAMTMQ 300 SYPIGMHTLP FQNLQNLPPH GYQFNGFYDM DILQAHMFNN YMDGRK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 12 | 25 | KEKSRRTTFQKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA33537 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004516685.1 | 0.0 | MADS-box transcription factor 20-like | ||||
TrEMBL | A0A2K3PBS9 | 0.0 | A0A2K3PBS9_TRIPR; MADS-box transcription factor pheres 2-like protein | ||||
STRING | XP_004516685.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF534 | 31 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 4e-25 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA33537 |