PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA33328
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HB-other
Protein Properties Length: 268aa    MW: 30587.3 Da    PI: 5.0145
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA33328genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox19.41.8e-061471752
                               --HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHH CS
                   Homeobox  7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrR 52
                               ++ +++ eLe+ ++   ++ ++++  +++A++           +L+ +qV+ WFqN+ 
  Tp57577_TGAC_v2_mRNA33328 14 LSMDEILELERIYNDvgEKSLDHNFCKDIATNFssssnsvgknSLSWEQVQQWFQNKH 71
                               577899********667***************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.26E-51878IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.6E-42079IPR009057Homeodomain-like
PfamPF167192.4E-35116243IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006306Biological ProcessDNA methylation
GO:0006346Biological Processmethylation-dependent chromatin silencing
GO:0031047Biological Processgene silencing by RNA
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MKDLTSNQSP CSKLSMDEIL ELERIYNDVG EKSLDHNFCK DIATNFSSSS NSVGKNSLSW  60
EQVQQWFQNK HRESKGQFAS SPEGLNLFVD LSEKSSIKGH KSSPKPKGIQ AADLSEMAFE  120
AISIKDNAWH DVAMFMNYRV LCTGELEVRV RYHGFSKDED EWINVKDGVR QRSIPLEASE  180
CHKVQEGHLV LCFLEKSDYA LYCDACVLKI ERRVHDSKEC SCIFTVRFYH DKSEEEVRWD  240
GICCRPTQEE AEAPLEAFLN PIETLWG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A4e-471152482135SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B4e-471152482135SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A4e-471152482135SHH1 SAWADEE
4iur_B4e-471152482135SHH1 SAWADEE
4iut_A4e-471152482135SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B4e-471152482135SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A4e-471152482135SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B4e-471152482135SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A4e-471152482135SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B4e-471152482135SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA33328
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1392450.0BT139245.1 Medicago truncatula clone JCVI-FLMt-7I14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444186.11e-162protein SAWADEE HOMEODOMAIN HOMOLOG 1
TrEMBLA0A2Z6MMC81e-173A0A2Z6MMC8_TRISU; Uncharacterized protein
STRINGXP_004510301.11e-151(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27041415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.37e-48sequence-specific DNA binding transcription factors;sequence-specific DNA binding