PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA3322 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 257aa MW: 30044.8 Da PI: 10.1832 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 64.2 | 3.5e-20 | 24 | 117 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkl 81 +fY +Y+k GF vrks s+ + + n+ i++++fvC+k+g re+++ +k+ ++r trt+C a+l+vk + +++++v+ + Tp57577_TGAC_v2_mRNA3322 24 DFYYRYGKYNGFAVRKSDSRVRgsEGNKVIKMKQFVCKKHGVREKRHLVrIDKKLEHRRLTRTKCGARLRVKYKAeKDRYVVSAF 108 6***************9998776688999***************9987756788899****************999********* PP FAR1 82 eleHnHela 90 e+ HnHel+ Tp57577_TGAC_v2_mRNA3322 109 EETHNHELT 117 *******95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.0E-18 | 24 | 117 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
VRFDTITAEE IRSMEFPTVS EAYDFYYRYG KYNGFAVRKS DSRVRGSEGN KVIKMKQFVC 60 KKHGVREKRH LVRIDKKLEH RRLTRTKCGA RLRVKYKAEK DRYVVSAFEE THNHELTLAR 120 FVQLHPLYRK ISEVDKAQVD GLQKRGIRTC HIMGYMVAQK GGYADVGFTK KCVLLLKMVM 180 YNYFDKKMRA VIKDGDVVAS LNYLNMKSSS DPMLYAEHAV DNINGRMKTI FWADGISRTD 240 YFCFGDVLAF DTTYRKN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA3322 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024640473.1 | 1e-118 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2K3LXK3 | 1e-131 | A0A2K3LXK3_TRIPR; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3290 | 7 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 4e-27 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA3322 |