PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA33062
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 373aa    MW: 41705.3 Da    PI: 6.4308
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA33062genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS264.73.1e-81243693302
                       GRAS   3 elLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                                +lL ec ++v+sg+ ++a+  L+ +s++         + +++yf eAL  +++++ +++ykal++s+ts   ss+ + ++k+f+
  Tp57577_TGAC_v2_mRNA33062  24 SLLNECTKCVASGSIKNADIGLEYISQIHHLMVmLCKELIVTYFSEALGYKIVKHLPGVYKALNSSKTS--LSSDDILVHKYFY 105
                                799************************9777664789999************************99998..79*********** PP

                       GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfA 169
                                e++P+lkfs+l++NqaI+e++e e+ vHiiD+  s+++QW++L+q+L +R +gpp+l+iTg+++    +ke l ++   L+  A
  Tp57577_TGAC_v2_mRNA33062 106 ELCPFLKFSYLITNQAIVESMECEKVVHIIDLHCSEPAQWINLIQTLKKRHGGPPHLKITGIHE----KKEVLDQMSFHLTTEA 185
                                ****************************************************************....9*************** PP

                       GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll....................................... 214
                                 +l+ p++fn+ ++++led+++e+L vk+g+a+a+ ++lqlh+ll                                       
  Tp57577_TGAC_v2_mRNA33062 186 GNLDFPLQFNP-IVSKLEDVDFENLPVKTGDAVAITSALQLHSLLatddkmvgkispagpssinlqragqmgqrtfaewlerdm 268
                                ***********.7999******************************************************************** PP

                       GRAS 215 .................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                                                   s ++      +L+++++l+Pk++v++eqe+++n+ +++er+ +al++y++lfd+l++++ r+s e
  Tp57577_TGAC_v2_mRNA33062 269 snayilssdsalsplflGVSPKMGI----FLNTMRKLKPKLLVITEQESNLNGCNLMERIDRALYFYTSLFDCLDSTVTRTSVE 348
                                *******999998887777777777....******************************************************* PP

                       GRAS 282 rikvErellgreivnvvaceg 302
                                + k+E +llg++i+n+++ceg
  Tp57577_TGAC_v2_mRNA33062 349 KLKLESMLLGEQIKNIITCEG 369
                                ********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.9631372IPR005202Transcription factor GRAS
PfamPF035141.0E-7824369IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MVFDSPCQWP RELRCDSNSS NPTSLLNECT KCVASGSIKN ADIGLEYISQ IHHLMVMLCK  60
ELIVTYFSEA LGYKIVKHLP GVYKALNSSK TSLSSDDILV HKYFYELCPF LKFSYLITNQ  120
AIVESMECEK VVHIIDLHCS EPAQWINLIQ TLKKRHGGPP HLKITGIHEK KEVLDQMSFH  180
LTTEAGNLDF PLQFNPIVSK LEDVDFENLP VKTGDAVAIT SALQLHSLLA TDDKMVGKIS  240
PAGPSSINLQ RAGQMGQRTF AEWLERDMSN AYILSSDSAL SPLFLGVSPK MGIFLNTMRK  300
LKPKLLVITE QESNLNGCNL MERIDRALYF YTSLFDCLDS TVTRTSVEKL KLESMLLGEQ  360
IKNIITCEGV SF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-332837125310Protein SCARECROW
5b3h_A3e-332837124309Protein SCARECROW
5b3h_D3e-332837124309Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA33062
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004513385.10.0scarecrow-like protein 3
SwissprotQ9LPR81e-104SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2Z6MW560.0A0A2Z6MW56_TRISU; Uncharacterized protein
STRINGXP_004513385.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145191017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-107scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]