PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA33043
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 300aa    MW: 34422.4 Da    PI: 7.5653
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA33043genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.31.3e-11139183448
                                S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                WT+ E+ l++++ + +G g+W +I+r    +Rt+ q+ s+ qky+
  Tp57577_TGAC_v2_mRNA33043 139 WTEAEHRLFLQGLENHGWGDWQSISRNCVVTRTPTQVASHAQKYK 183
                                ***************************999*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132011.3432358IPR010399Tify domain
PfamPF062005.7E-82450IPR010399Tify domain
PROSITE profilePS5129413.672131187IPR017930Myb domain
SuperFamilySSF466891.58E-15132188IPR009057Homeodomain-like
SMARTSM007171.0E-6135185IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.4E-14137186IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.3E-8138181IPR009057Homeodomain-like
CDDcd001671.52E-8139183No hitNo description
PfamPF002491.2E-9139183IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MCHFIMIYGV FIFFYSGFNS MANEPKNAQL TLLYDGKTFV LDDFPADKLD DLKSIAKTLT  60
QPGIENALAN HPEEWEQFAA YVTGKCLEEV KRHYVDLIDD VNHIESGYVP LPAYNELRTV  120
KKGTETSRTV QERRKVIHWT EAEHRLFLQG LENHGWGDWQ SISRNCVVTR TPTQVASHAQ  180
KYKIRQNSKE KNKERKRSSI HDVTHVXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  240
SSNLTCWNLL NVSAAGQSAE QAPPTGIYAA PKDRALYWRI PCICSWHSSE SYCCWTHGL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA33043
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003628698.13e-65transcription factor SRM1
TrEMBLA0A2K3NF021e-133A0A2K3NF02_TRIPR; Transcription factor DIVARICATA-like protein
STRINGAES596961e-64(Medicago truncatula)
STRINGAET031741e-64(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-41MYB family protein