PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA32997
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GeBP
Protein Properties Length: 363aa    MW: 41251.8 Da    PI: 10.0223
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA32997genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57367.13.8e-2111105397
                     DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehd 85 
                                ++r++s +Dei+lL Gl++ k+k+g +p + ++++y++ k s s k + k+ql++Ki +LKkK++++ +  k++ +  f  +h 
  Tp57577_TGAC_v2_mRNA32997  11 PKRIFSRNDEIILLNGLLQIKSKRGIDPAKILSKVYSTHKYSFSNKtIRKRQLSDKIHKLKKKYQENLTM-KEQGSLIFIDTHK 93 
                                79****************************************997626799******************9.77777899999** PP

                     DUF573  86 qkifelskkiWg 97 
                                +k fels+ +Wg
  Tp57577_TGAC_v2_mRNA32997  94 EKLFELSNELWG 105
                                ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.1E-1912105IPR007592Protein of unknown function DUF573
SuperFamilySSF534741.6E-6312362IPR029058Alpha/Beta hydrolase fold
Gene3DG3DSA:3.40.50.18208.5E-10313362IPR029058Alpha/Beta hydrolase fold
PfamPF004505.4E-7320362IPR001563Peptidase S10, serine carboxypeptidase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0004185Molecular Functionserine-type carboxypeptidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MAKNKKQTVK PKRIFSRNDE IILLNGLLQI KSKRGIDPAK ILSKVYSTHK YSFSNKTIRK  60
RQLSDKIHKL KKKYQENLTM KEQGSLIFID THKEKLFELS NELWGVENGA VDRETGADDG  120
EHGDDNMHMN LLKRAEMDRR CLELKVQEDK LRLQRSLLLK EQVDLIYKSL LESSESRTSL  180
LIASRVWSSL APSRADLLLW CYPEDGPSIL SDAWIAVESS RSLNVGSTWE WKSINSSPNV  240
SIEKASKAGL RAMLPLTPLG SLPLLGCIND FIGRNHSLCL LPPLPLFQVN SAPLIILEPT  300
LSRSRHRVLI SEPDRVRNLP GQPKVRFHQY SGFISVDDVQ KRKLFYYFVE ALLNPASEPI  360
VL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA32997
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.14e-10DNA-binding storekeeper protein-related transcriptional regulator