PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA32815
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 675aa    MW: 75951.2 Da    PI: 7.9261
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA32815genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.7e-0786128346
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                +WT+eE ++l ++++++  + +  Ia +++  Rt +++k+r+++
  Tp57577_TGAC_v2_mRNA32815  86 KWTKEETDQLFELCERFNLR-FIVIADRFPSSRTVEELKDRYYS 128
                                8******************9.*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF162829.5E-2666133IPR032563DAMP1, SANT/Myb-like domain
SMARTSM007176.9E-883132IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-784133IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-685130IPR009057Homeodomain-like
CDDcd116581.17E-1787129No hitNo description
PfamPF054996.6E-6270335IPR008468DNA methyltransferase 1-associated 1
PfamPF072811.4E-6477612IPR025929Insulin-induced protein family
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MDVKDILGLP QISFPVQEKN SQPHNQSQRK PDDISREVYA LTGGLAPLIP AVDLSLLNKR  60
PQSDEKSADI TRYTDEEYEK YLANPKWTKE ETDQLFELCE RFNLRFIVIA DRFPSSRTVE  120
ELKDRYYSVS RAILIARNPS SGDVAVHPLV KEPYNVSHEK ERKRAMSLVL SQTRQQERRD  180
EEVLAEAKRI AELRLMTKVA EEAELVVTSN AGEDVTERAN PSPSNMELPP IVVPSPIKTD  240
NASTVASLRM LHVYLRTYAL EQMLQSASSS AGLRTINRVD QTLQELGVNL KPRVPTKAVC  300
AEHLELRNEI LTLLNIQKQL QNKEAEGSSF RDGSNCETTG TPKRSHRGDQ DRTFVPDNTS  360
SGGERIGKRD QKRKVATGMD VMVCSALLIG IMNLVNIIPF SCPKTNNFLL PLTQCAHKKN  420
MQYLLSSGSP SFLQTYTHHT HTYPLYGVRK RGLLKPRGAV NQQSQTSVRT SWPRVSLSLF  480
GAGFLFGPLL DGLHSRVELV VYKSGAIDIG QLHTNIWVPP LLGLFYCSVG LLQLYLDERL  540
INKVQEGSLA KTITSLILLA LFIELSAELY KAGIADNIEA YALFAAAEFM WFLLNRTWPG  600
FILACIVGFA CPLAEIPLMK FLHLWYYPQA NVEIFGQGLV TWTLTCYFVY TLFIINLSRW  660
FRTVYTAQTE ESDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3hm5_A5e-15661291279DNA methyltransferase 1-associated protein 1
4iej_A5e-15661291279DNA methyltransferase 1-associated protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA32815
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012569912.10.0SWR1-complex protein 4
SwissprotQ8VZL61e-146SWC4_ARATH; SWR1-complex protein 4
TrEMBLA0A1S3E2960.0A0A1S3E296_CICAR; SWR1-complex protein 4
STRINGAES616160.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49752330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47210.11e-148MYB_related family protein
Publications ? help Back to Top
  1. Gómez-Zambrano Á, et al.
    Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes.
    Mol Plant, 2018. 11(6): p. 815-832
    [PMID:29604400]