PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA3266
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 293aa    MW: 33984.8 Da    PI: 5.5829
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA3266genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.59.5e-162668145
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                              rg+++ eE  l+++++  lG++ W+ Ia++++ gRt++++k++w+
  Tp57577_TGAC_v2_mRNA3266 26 RGNFSNEEAALIIELHSILGNR-WAQIAKHLP-GRTDNEVKNFWN 68
                              89********************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.333120IPR017877Myb-like domain
SuperFamilySSF466891.15E-20676IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-10632IPR009057Homeodomain-like
PROSITE profilePS5129424.8922175IPR017930Myb domain
SMARTSM007175.9E-162573IPR001005SANT/Myb domain
PfamPF002492.8E-142669IPR001005SANT/Myb domain
CDDcd001675.43E-122868No hitNo description
Gene3DG3DSA:1.10.10.603.1E-203370IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MCLGLQRCGK SCRLRWINYL RPDLKRGNFS NEEAALIIEL HSILGNRWAQ IAKHLPGRTD  60
NEVKNFWNSS VKKRILSHNI IPSFNTFSNV HIPFNHYHHQ DHLYFPSSSQ NLQSNFHIQN  120
PVPEIAQPIF NPPCYEDTCS MDCVPLHLNS NQENQISKSD TTSLNIVDKL INPTTLIQQY  180
DQCHDDDLFE LEYIVPKMSD QSFEDYYACS NPIELMQQYD KCHDHHHLVE FDQPIVPKLF  240
NDQSHEDYAC SFQESSNFEA HEAPIKIQGY TSSSIYSQDH TLEANQFDYN SC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-2377540108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA3266
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0045212e-35AP004521.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT17K09, TM0049a, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444365.11e-93transcription factor MYB26
TrEMBLA0A072TLY23e-92A0A072TLY2_MEDTR; Myb-like DNA-binding domain protein
STRINGXP_004510395.12e-81(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30143168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.29e-45myb domain protein 26