PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA32604 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | NF-YA | ||||||||
Protein Properties | Length: 234aa MW: 25643.9 Da PI: 10.1679 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 105.9 | 3.4e-33 | 75 | 131 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++Il+RRq+Rakle+++kl +ksrkpylheSRhkhAl+R Rg+gGrF Tp57577_TGAC_v2_mRNA32604 75 DGPIYVNAKQYHGILRRRQSRAKLEAQNKL-IKSRKPYLHESRHKHALNRVRGTGGRF 131 57****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 3.7E-37 | 73 | 134 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.178 | 74 | 134 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.0E-24 | 77 | 99 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 3.7E-28 | 77 | 131 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 79 | 99 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 1.0E-24 | 108 | 131 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MKPFLFLNHP DTEFNCSQVD RNSSMAHAPY PYGDPIFAGS LVAYAPQAVN QPQMMPQMMG 60 LASARVALPL DLAQDGPIYV NAKQYHGILR RRQSRAKLEA QNKLIKSRKP YLHESRHKHA 120 LNRVRGTGGR FLSTKQLSQS NAEFVTGSHS GSLNKYEKED NLGIESHHSS KTGDNVSSIT 180 TCSDRTCFSG NSFNFRQPEH MFLGNSPNMG GGAPQCSGGL TFGGTKQRTS VVR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-22 | 75 | 136 | 2 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA32604 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ918268 | 0.0 | JQ918268.1 Medicago truncatula nuclear transcription factor Y subunit A3 (NF-YA3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012574919.1 | 1e-153 | nuclear transcription factor Y subunit A-4-like | ||||
TrEMBL | A0A2K3P9J4 | 1e-174 | A0A2K3P9J4_TRIPR; Nuclear transcription factor Y subunit A-3-like protein | ||||
STRING | XP_004513462.1 | 1e-152 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6949 | 31 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72830.1 | 2e-42 | nuclear factor Y, subunit A3 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA32604 |