PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA3260
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 830aa    MW: 91630.8 Da    PI: 6.5073
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA3260genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS412.34.4e-1264598162374
                      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                                +lLl+cAeavs+++le+a+++L ++s+l++p g++ qR+aayf eA++arl++s+ ++y +lpp  t+  + +++++a+++f+ 
  Tp57577_TGAC_v2_mRNA3260 459 LTLLLQCAEAVSAENLEQANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYTTLPPHITP--HNQKVASAFQVFNG 541
                               579************************************************************999998..47788899****** PP

                      GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAee 171
                               +sP++kfsh+taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s e+le+tg+rL++fA++
  Tp57577_TGAC_v2_mRNA3260 542 ISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGT----SMETLEATGKRLSDFASK 622
                               ***************************************************************....****************** PP

                      GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                               lg+pfef + va+++ ++++++L+v++ Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++ n++sFl r
  Tp57577_TGAC_v2_mRNA3260 623 LGLPFEFFP-VAEKVGNIDPDKLNVSKSEAVAVHWLQ--HSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDLS-NAGSFLGR 699
                               *********.7*************************9..999999999999....*******************97.699***** PP

                      GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
                               f+ea++yysalfdsl +++++eseer++vE++ll+rei+nv+a  g +r  + + +++Wre+l+++GF+ ++l  +aa+qa+lll
  Tp57577_TGAC_v2_mRNA3260 700 FVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSREIRNVLAVGGPSRSGEIK-FHNWREKLQQCGFRGISLAGNAATQASLLL 783
                               ************************************************888776.****************************** PP

                      GRAS 342 rkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                +++s+gy++ e++g l lgWkd  L+++SaWr
  Tp57577_TGAC_v2_mRNA3260 784 GMFPSEGYTLVEDNGILKLGWKDLCLLTASAWR 816
                               ********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.708432796IPR005202Transcription factor GRAS
PfamPF035141.5E-123459816IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 830 aa     Download sequence    Send to blast
MAACALFNGG GGNSDETNLS NNNNNSTASN SSNISSEDLH HNMLQTQPHH SERKLLRKRM  60
ASEMELQLHN NNNSSSDNYH RFPRRNNNNN ISSLNCSLPS ATQKGVTTTT TTLLAAGTNN  120
STSTNNNNYH YHNNNINNNN NSNVALSRDN VCIQNYPTVS VTTNYSTMLL PSSSSNNLNN  180
SSNSASNYTH FQQPLVEEQN NPLPSICGFS GLPLFPSQNQ TNNNNRNNGS SNIITCAAAN  240
IVDVVSPSMM EETSATTNWI DGILKDLIHT SNSVSISQLI NNVREIIYPC NPNLALVLEH  300
RLRLLTETIP QNCSSSVVTE RKRNNTEQQQ QQQQSVVNVN VLAAPNVNSS VKLMNRVDDI  360
VQTSLHFSDS SHVLNQNQNI FPNWVVPQNQ INSNNNNNPS VSSVNLPSQQ DQQHQEHHQE  420
DLAPARTTET TSAELALTRK KKEEIKEQKK KDEEGLHLLT LLLQCAEAVS AENLEQANKM  480
LLEISQLSTP FGTSAQRVAA YFSEAISARL VSSCLGIYTT LPPHITPHNQ KVASAFQVFN  540
GISPFVKFSH FTANQAIQEA FEREERVHII DLDIMQGLQW PGLFHILASR PGGPPYVRLT  600
GLGTSMETLE ATGKRLSDFA SKLGLPFEFF PVAEKVGNID PDKLNVSKSE AVAVHWLQHS  660
LYDVTGSDTN TLWLLQRLAP KVVTVVEQDL SNAGSFLGRF VEAIHYYSAL FDSLGSSYGE  720
ESEERHVVEQ QLLSREIRNV LAVGGPSRSG EIKFHNWREK LQQCGFRGIS LAGNAATQAS  780
LLLGMFPSEG YTLVEDNGIL KLGWKDLCLL TASAWRPPFH TNNVIPHHN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.04418173380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA3260
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0487130.0AB048713.1 Pisum sativum PsSCR mRNA for SCARECROW, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003623699.10.0protein SCARECROW
SwissprotQ9AVK40.0SCR_PEA; Protein SCARECROW
TrEMBLA0A2K3PDT30.0A0A2K3PDT3_TRIPR; Protein SCARECROW-like
STRINGAES799170.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein