PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA32598 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MYB_related | ||||||||
Protein Properties | Length: 36aa MW: 4084.63 Da PI: 9.2616 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.5 | 6.2e-13 | 7 | 34 | 2 | 29 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIar 29 g+WT+eEd++l+ +v+q+G g+W++ ++ Tp57577_TGAC_v2_mRNA32598 7 GAWTPEEDKKLIAYVTQHGHGNWHSLPS 34 89*********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.527 | 1 | 36 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.9E-9 | 4 | 35 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.0E-12 | 5 | 35 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.2E-10 | 6 | 34 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.21E-7 | 8 | 35 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 36 aa Download sequence Send to blast |
MPVLRTGAWT PEEDKKLIAY VTQHGHGNWH SLPSRA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA32598 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K3L9E2 | 3e-18 | A0A2K3L9E2_TRIPR; Transcription factor MYB 32-like protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01140.1 | 2e-12 | myb domain protein 106 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA32598 |