PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA32568 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 167aa MW: 19503.2 Da PI: 7.2554 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 76.7 | 1.7e-24 | 22 | 68 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + ++n+qvtfskRr+g++KKA+EL+vLCd+ +a+i+fs+ +kly + Tp57577_TGAC_v2_mRNA32568 22 LDKETNKQVTFSKRRQGLFKKASELCVLCDVHAAIIVFSPADKLYSF 68 57899****************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.5E-33 | 12 | 71 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.324 | 12 | 72 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.06E-28 | 13 | 84 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.04E-32 | 13 | 84 | No hit | No description |
PRINTS | PR00404 | 6.3E-22 | 14 | 34 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-24 | 23 | 68 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-22 | 34 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-22 | 49 | 70 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MDNMLQQKKK TTGRRKIEIK KLDKETNKQV TFSKRRQGLF KKASELCVLC DVHAAIIVFS 60 PADKLYSFGQ PNTDAILNSY INGTTEFTDA KSMEDSSTYA EYNGQYEESL KMLEMEKKKL 120 AEVENLAKTW NRGDWWNDSI DDMSINQLEQ FMISLYELRK KLFERAD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1egw_A | 3e-16 | 13 | 80 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_B | 3e-16 | 13 | 80 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_C | 3e-16 | 13 | 80 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_D | 3e-16 | 13 | 80 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
3mu6_A | 2e-16 | 13 | 80 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_B | 2e-16 | 13 | 80 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_C | 2e-16 | 13 | 80 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_D | 2e-16 | 13 | 80 | 1 | 68 | Myocyte-specific enhancer factor 2A |
6byy_A | 3e-16 | 13 | 90 | 2 | 75 | MEF2 CHIMERA |
6byy_B | 3e-16 | 13 | 90 | 2 | 75 | MEF2 CHIMERA |
6byy_C | 3e-16 | 13 | 90 | 2 | 75 | MEF2 CHIMERA |
6byy_D | 3e-16 | 13 | 90 | 2 | 75 | MEF2 CHIMERA |
6bz1_A | 3e-16 | 13 | 90 | 2 | 75 | MEF2 CHIMERA |
6bz1_B | 3e-16 | 13 | 90 | 2 | 75 | MEF2 CHIMERA |
6bz1_C | 3e-16 | 13 | 90 | 2 | 75 | MEF2 CHIMERA |
6bz1_D | 3e-16 | 13 | 90 | 2 | 75 | MEF2 CHIMERA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA32568 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013465623.1 | 4e-88 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2K3LNC6 | 1e-120 | A0A2K3LNC6_TRIPR; Agamous-like mads-box protein agl62-like | ||||
STRING | AES84416 | 2e-86 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 8e-34 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA32568 |