PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA32555

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

HD-ZIP

Protein Properties

Length: 149aa MW: 17637 Da PI: 8.8231

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA32555	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.2	6.9e-19	63	117	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t++q++ Le+ F+++ +++ e++ +L+++lgL+ rq+ vWFqNrR+++k Tp57577_TGAC_v2_mRNA32555 63 EKKKRLTSNQIDLLERSFQEEIKLDPERKIKLSRELGLQPRQIAVWFQNRRTRWK 117 67788*************************************************9 PP
2	HD-ZIP_I/II	111.8	4.3e-36	63	147	1	85
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 ekk+rl+++q+ lLE+sF+ee kL+perK +l+reLglqprq+avWFqnrR R+k+k+lE+ y++Lk+++d +++e+++L++ev Tp57577_TGAC_v2_mRNA32555 63 EKKKRLTSNQIDLLERSFQEEIKLDPERKIKLSRELGLQPRQIAVWFQNRRTRWKAKHLEHLYDVLKQEFDVVSKEKQKLQEEV 146 69*******************************************************************************997 PP HD-ZIP_I/II 85 e 85 + Tp57577_TGAC_v2_mRNA32555 147 T 147 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.71E-19	51	119	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.572	59	119	IPR001356	Homeobox domain
SMART	SM00389	2.6E-17	62	123	IPR001356	Homeobox domain
CDD	cd00086	1.19E-14	62	120	No hit	No description
Pfam	PF00046	2.8E-16	63	117	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.1E-19	65	126	IPR009057	Homeodomain-like
PRINTS	PR00031	6.0E-5	90	99	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	94	117	IPR017970	Homeobox, conserved site
PRINTS	PR00031	6.0E-5	99	115	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MDWNIESTRP FVPHAESSLS FFYNYNNTPY SGMDVSQAAM GETQQRLLPA MDEMNINGNN 60 YKEKKKRLTS NQIDLLERSF QEEIKLDPER KIKLSRELGL QPRQIAVWFQ NRRTRWKAKH 120 LEHLYDVLKQ EFDVVSKEKQ KLQEEVTT*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA32555

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013450066.1	2e-94	homeobox-leucine zipper protein ATHB-22
Swissprot	Q9LZR0	2e-44	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A2K3PMJ1	1e-103	A0A2K3PMJ1_TRIPR; Homeobox-leucine zipper protein ATHB-51-like
STRING	XP_004494126.1	2e-82	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3394	34	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	7e-47	homeobox 51

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA32555

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]