PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA32500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 83aa    MW: 9608.26 Da    PI: 10.8467
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA32500genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR124.58.7e-081675153
                       FAR1  1 kfYneYAkevGFsvrkskskkskr.ngeitkrtfvCskegkreeekkk......tekerr 53
                               kf+ +Y  ++G  vrk++ +ksk+  g  t+ +fvC keg r+++k +      ++++rr
  Tp57577_TGAC_v2_mRNA32500 16 KFWIDYWGRIGVGVRKQYIHKSKDgRGLATSCRFVCCKEGLRKSNKLNeilkqsSQDKRR 75
                               6999**************9999651577899**************999666543222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.3E-51675IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MPKKGMLFYN INGAWKFWID YWGRIGVGVR KQYIHKSKDG RGLATSCRFV CCKEGLRKSN  60
KLNEILKQSS QDKRREQIVK QG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA32500
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024632821.16e-20protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2Z6MJF13e-30A0A2Z6MJF1_TRISU; Uncharacterized protein
STRINGAES877114e-19(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30451449