PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA32495 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 160aa MW: 18369.4 Da PI: 10.0555 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 43.2 | 5.2e-14 | 10 | 48 | 2 | 40 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 +i ++s r+ t+ kR++gi+KK +EL +LC++ ++ ii Tp57577_TGAC_v2_mRNA32495 10 FICDDSARKATYKKRKKGIMKKVSELTILCGIPACAIIS 48 578999*****************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.11 | 1 | 47 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.0E-18 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.5E-21 | 1 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-6 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.6E-15 | 10 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-6 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MTRKKVKLGF ICDDSARKAT YKKRKKGIMK KVSELTILCG IPACAIISNP FDSKTEVWPD 60 IAEAKQIIER YQNSSVIDGA KIVNQESFLL QRITKAREQL RKQKHDNHEK ELTVRMIGYM 120 KNKQLPDDLS VSDLKQFDKL IDKNLKDLDN KIVELNSFD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVKLGFICDDSARKATYKKRK |
2 | 21 | 25 | KKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA32495 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003614286.1 | 2e-80 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A2K3LDM7 | 1e-110 | A0A2K3LDM7_TRIPR; Agamous-like mads-box protein agl80-like | ||||
STRING | AES97244 | 9e-80 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13237 | 9 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 5e-32 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA32495 |