PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA32455

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 118aa MW: 13991.5 Da PI: 4.5865

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA32455	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25.4	4.5e-08	69	116	1	42
FAR1 1 kfYneYAkevGFsvrkskskks......krngeitkrtfvCskegkre 42 +fY+ +A++ GFs+r+++ +ks + i+kr+fvC + g + Tp57577_TGAC_v2_mRNA32455 69 EFYRLFARKNGFSIRRDHIYKSvkheseMNPSGIYKREFVCHRGGIVK 116 6******************9877665444569*******99765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.1E-6	69	116	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
LEVSMISEET NGVSDWHLEL LNDYASIVED DEYLLQDPQH EPLTDQVNNI DECFPFEGQI 60 FNSDYEAYEF YRLFARKNGF SIRRDHIYKS VKHESEMNPS GIYKREFVCH RGGIVKHR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA32455

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024640712.1	2e-40	protein FAR1-RELATED SEQUENCE 11-like
TrEMBL	A0A2K3N8Z5	3e-72	A0A2K3N8Z5_TRIPR; Protein FAR1-related sequence 11-like
STRING	AES98736	3e-37	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	7e-15	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA32455