PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA32398
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 528aa    MW: 58920.3 Da    PI: 4.527
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA32398genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4324.4e-1321595272374
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                                ++lL+ecA+a+s+g+ e a+ +++ l++++s +g+p qR+aay++e+Laarla+s++++y+al+++e +   s ++laa+++++
  Tp57577_TGAC_v2_mRNA32398 159 KQLLYECATAISEGNEEGASLMINVLRQMVSIQGEPSQRIAAYMVEGLAARLAESGKSIYRALKCKEPP---SLDRLAAMQILF 239
                                589*****************************************************************9...9*********** PP

                       GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLak 167
                                ev+P++kf++++aN+aI eav+ e ++HiiDfdi+qG Q+++L+q+LasR+ +p ++R+Tg++++es+  s   l+ +g+rL++
  Tp57577_TGAC_v2_mRNA32398 240 EVCPCFKFGFIAANNAISEAVKDEMMIHIIDFDINQGSQYMNLIQTLASRSIKPSHVRLTGIDDSESVqrSLGGLKIIGQRLEQ 323
                                ****************************************************************999888899*********** PP

                       GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251
                                +A+++g++fef++ va+r++ ++ ++L++++gEal+Vn+++qlh+++desvs+ +erd++L+lvk+l+Pk+v+vveq++++n++
  Tp57577_TGAC_v2_mRNA32398 324 LAQTVGLSFEFRA-VASRTSIVTSSMLNCRHGEALVVNFAFQLHHMPDESVSTVNERDQLLRLVKGLNPKLVTVVEQDVNTNTT 406
                                *************.7********************************************************************* PP

                       GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                                +Fl+rf+ea +yysa+f+sl+++lpres++r++vEr++l+r+ivn vaceg++r+er e ++kWr+r+++aGF + p+s++a +
  Tp57577_TGAC_v2_mRNA32398 407 PFLQRFVEAYNYYSAVFESLDVTLPRESQDRMNVERQCLARDIVNTVACEGEDRIERYEVAGKWRARMTMAGFISSPMSTNASD 490
                                ************************************************************************************ PP

                       GRAS 336 qaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                +++           +++ee+g+l +gW+d++L+++SaWr
  Tp57577_TGAC_v2_mRNA32398 491 EIRXXXXXXX--XXKIKEEKGALHFGWEDKNLIVASAWR 527
                                ****999999..459***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.242132509IPR005202Transcription factor GRAS
PfamPF035141.5E-129159527IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MYMADTYSGQ SYEKYFHDSQ TEELIEPSSS NISTSSIHPD SASSYQLIGS SGASLVASSD  60
FVTDLIMENP SVVSIEVDGV MRSKLEALER ALLDDSDIEV EEEYANFQSM EIDPNIIDWA  120
DPDPIQNMLL RDSPKEYSSS DSNISSISRE IPKISRTPKQ LLYECATAIS EGNEEGASLM  180
INVLRQMVSI QGEPSQRIAA YMVEGLAARL AESGKSIYRA LKCKEPPSLD RLAAMQILFE  240
VCPCFKFGFI AANNAISEAV KDEMMIHIID FDINQGSQYM NLIQTLASRS IKPSHVRLTG  300
IDDSESVQRS LGGLKIIGQR LEQLAQTVGL SFEFRAVASR TSIVTSSMLN CRHGEALVVN  360
FAFQLHHMPD ESVSTVNERD QLLRLVKGLN PKLVTVVEQD VNTNTTPFLQ RFVEAYNYYS  420
AVFESLDVTL PRESQDRMNV ERQCLARDIV NTVACEGEDR IERYEVAGKW RARMTMAGFI  480
SSPMSTNASD EIRXXXXXXX XXKIKEEKGA LHFGWEDKNL IVASAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6316452625378Protein SCARECROW
5b3h_A9e-6416452624377Protein SCARECROW
5b3h_D9e-6416452624377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA32398
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013461369.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A2K3PDW80.0A0A2K3PDW8_TRIPR; SCARECROW-like protein 1-like
STRINGXP_004502571.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49883457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]